Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R25_RS05885 Genome accession   NZ_AP022261
Coordinates   1235934..1236671 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WP8-S18-ESBL-07     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230934..1241671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R25_RS05855 (WP8S18E07_11470) yfiL 1231093..1231458 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  H7R25_RS05860 (WP8S18E07_11480) aroF 1231667..1232737 (+) 1071 WP_001168050.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7R25_RS05865 (WP8S18E07_11490) tyrA 1232748..1233869 (+) 1122 WP_000225203.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R25_RS05870 (WP8S18E07_11500) pheA 1233912..1235072 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R25_RS05875 pheL 1235172..1235219 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7R25_RS05880 (WP8S18E07_11510) raiA 1235323..1235664 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7R25_RS05885 (WP8S18E07_11520) comL 1235934..1236671 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7R25_RS05890 (WP8S18E07_11530) rluD 1236806..1237786 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R25_RS05895 (WP8S18E07_11540) yfiH 1237783..1238514 (+) 732 WP_000040155.1 purine nucleoside phosphorylase YfiH -
  H7R25_RS05900 (WP8S18E07_11550) clpC 1238644..1241217 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=67177 H7R25_RS05885 WP_000197686.1 1235934..1236671(-) (comL) [Escherichia coli strain WP8-S18-ESBL-07]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=67177 H7R25_RS05885 WP_000197686.1 1235934..1236671(-) (comL) [Escherichia coli strain WP8-S18-ESBL-07]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAAATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment