Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KNN_RS07680 Genome accession   NZ_AP014864
Coordinates   1434559..1436298 (+) Length   579 a.a.
NCBI ID   WP_000947768.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429559..1441298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN_RS07660 (KNN_01590) ispA 1429775..1430665 (+) 891 WP_000150379.1 (2E,6E)-farnesyl diphosphate synthase -
  KNN_RS07665 (KNN_01591) dxs 1430967..1432859 (+) 1893 WP_060851771.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KNN_RS07670 (KNN_01592) - 1432863..1433702 (+) 840 WP_000111871.1 TlyA family RNA methyltransferase -
  KNN_RS07675 (KNN_01593) argR 1433845..1434294 (+) 450 WP_001032580.1 arginine repressor ArgR -
  KNN_RS07680 (KNN_01594) recN 1434559..1436298 (+) 1740 WP_000947768.1 DNA repair protein RecN Machinery gene
  KNN_RS07685 (KNN_01595) spoIVB 1436417..1437715 (+) 1299 WP_002000940.1 SpoIVB peptidase -
  KNN_RS07690 (KNN_01596) spo0A 1438006..1438800 (+) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  KNN_RS07695 (KNN_01598) - 1439054..1439617 (+) 564 WP_000428237.1 PRK06770 family protein -
  KNN_RS07700 (KNN_01599) - 1439860..1440006 (-) 147 WP_001247671.1 YycC family protein -
  KNN_RS07705 (KNN_01600) - 1440057..1440785 (+) 729 WP_000172575.1 glycerophosphodiester phosphodiesterase -
  KNN_RS07710 (KNN_01601) - 1440835..1441068 (-) 234 WP_001190211.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65849.96 Da        Isoelectric Point: 4.8277

>NTDB_id=67176 KNN_RS07680 WP_000947768.1 1434559..1436298(+) (recN) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNVEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=67176 KNN_RS07680 WP_000947768.1 1434559..1436298(+) (recN) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAGAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAGCAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAGGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGTAGAAGAGCCCCTTGTGGAAGGTGCGCCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCATCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCGGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment