Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA20_RS07475 Genome accession   NZ_CP094742
Coordinates   1469834..1470694 (-) Length   286 a.a.
NCBI ID   WP_262620599.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6199     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1464834..1475694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA20_RS07460 (MUA20_07415) xerC 1465338..1466228 (-) 891 WP_262620596.1 tyrosine recombinase XerC -
  MUA20_RS07465 (MUA20_07420) trmFO 1466350..1467654 (-) 1305 WP_262620597.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA20_RS07470 (MUA20_07425) topA 1467667..1469736 (-) 2070 WP_262620598.1 type I DNA topoisomerase -
  MUA20_RS07475 (MUA20_07430) dprA 1469834..1470694 (-) 861 WP_262620599.1 DNA-processing protein DprA Machinery gene
  MUA20_RS07480 (MUA20_07435) sucD 1470999..1471907 (-) 909 WP_262620600.1 succinate--CoA ligase subunit alpha -
  MUA20_RS07485 (MUA20_07440) sucC 1471928..1473094 (-) 1167 WP_262620601.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA20_RS07490 (MUA20_07445) - 1473319..1473588 (-) 270 WP_262620602.1 hypothetical protein -
  MUA20_RS07495 (MUA20_07450) - 1473667..1474446 (-) 780 WP_262620603.1 ribonuclease HII -
  MUA20_RS07500 (MUA20_07455) ylqF 1474462..1475316 (-) 855 WP_262620604.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32233.24 Da        Isoelectric Point: 8.5950

>NTDB_id=671768 MUA20_RS07475 WP_262620599.1 1469834..1470694(-) (dprA) [Staphylococcus chromogenes strain IVB6199]
MHYAGFTTNQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVPLPIIDARFPSLL
KEIYHPPLLLYCKGNLNLFNDACYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDALAHHYALCNNIAT
IAVLGFGHFHHYPKHTQTLRTHIDKYAGGLSISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERSGALITLDQALE
QNRNVYVLPGDMFNPDTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=671768 MUA20_RS07475 WP_262620599.1 1469834..1470694(-) (dprA) [Staphylococcus chromogenes strain IVB6199]
ATGCATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTACATCTCCTGTGAAATCTTTACAATTTGAAATCAC
ACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCTCATTTTTACAAAAAATTTTTAGCTTTCCAATCCTTAGACA
TTGATATCATCCAGTCTCAATTAGAGGCGCATCGTATTGTACCCCTCCCAATCATTGATGCACGATTTCCTTCATTATTA
AAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTTAAATTTATTTAATGATGCGTGTTATTATCCTTT
AGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATTTATTACATCAGATGAAGCATCAGC
CTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACTGATGCATTAGCCCATCATTATGCATTGTGTAACAACATCGCTACA
ATAGCTGTATTGGGCTTTGGTCATTTTCACCATTATCCTAAACATACTCAAACCCTAAGAACACATATTGATAAATATGC
AGGGGGTTTAAGTATCAGCGAATATCCACCAACCACTGCTCCAGCAAAATTTAGATTTCCTGAACGCAATCGTATCATAA
GTGGCTTAAGTAAAGGAGTGCTCGTCACAGAGGCGAAAGAAAGAAGCGGTGCATTAATAACATTAGATCAAGCGTTAGAA
CAAAATCGTAATGTTTATGTTTTACCTGGGGATATGTTTAACCCCGATACAAAAGGAAATTTATTGCGTGTAAAGGAAGG
TGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.297

98.951

0.517
  dprA Staphylococcus aureus N315

51.943

98.951

0.514
  dprA Bacillus subtilis subsp. subtilis str. 168

38.007

94.755

0.36