Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA19_RS07425 Genome accession   NZ_CP094741
Coordinates   1543216..1544076 (-) Length   286 a.a.
NCBI ID   WP_262616402.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6200     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1538216..1549076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA19_RS07410 (MUA19_07390) xerC 1538722..1539582 (-) 861 WP_394371370.1 tyrosine recombinase XerC -
  MUA19_RS07415 (MUA19_07395) trmFO 1539734..1541038 (-) 1305 WP_262616400.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA19_RS07420 (MUA19_07400) topA 1541051..1543120 (-) 2070 WP_262616401.1 type I DNA topoisomerase -
  MUA19_RS07425 (MUA19_07405) dprA 1543216..1544076 (-) 861 WP_262616402.1 DNA-processing protein DprA Machinery gene
  MUA19_RS07430 (MUA19_07410) sucD 1544390..1545298 (-) 909 WP_262616403.1 succinate--CoA ligase subunit alpha -
  MUA19_RS07435 (MUA19_07415) sucC 1545319..1546485 (-) 1167 WP_262616404.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA19_RS07440 (MUA19_07420) - 1546711..1546980 (-) 270 WP_105986155.1 hypothetical protein -
  MUA19_RS07445 (MUA19_07425) - 1547059..1547838 (-) 780 WP_232195494.1 ribonuclease HII -
  MUA19_RS07450 (MUA19_07430) ylqF 1547819..1548709 (-) 891 WP_262616405.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32245.21 Da        Isoelectric Point: 8.1564

>NTDB_id=671736 MUA19_RS07425 WP_262616402.1 1543216..1544076(-) (dprA) [Staphylococcus chromogenes strain IVB6200]
MHYAGFTTNQIYQLFTSPDQALQFEIAPILKNHPLIHQKSHFYKKFLAFQSLDIDIILSQLEAHRIVPLPIIDAQFPSLL
KEIYHPPLLLYSKGNLNLFNDACYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDALAHHYALRNDIPT
IAVLGFGHFHHYPKHTQSLRTHIDKYAAGLIISEYPPPTAPAKFRFPERNRIISGLSKGVLVTEAKERSGALITLDQALE
QNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=671736 MUA19_RS07425 WP_262616402.1 1543216..1544076(-) (dprA) [Staphylococcus chromogenes strain IVB6200]
ATGCATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTACATCTCCTGACCAAGCTTTACAATTTGAAATCGC
GCCTATTTTAAAAAATCATCCTCTTATCCATCAGAAGTCTCATTTTTACAAAAAATTTTTAGCTTTCCAATCCTTAGACA
TTGATATCATCCTGTCTCAATTAGAGGCGCATCGTATTGTACCCCTCCCAATCATTGATGCACAATTTCCTTCATTATTA
AAAGAAATATATCATCCACCGTTATTACTCTATAGTAAGGGCAATTTAAATTTATTTAATGATGCGTGTTATTATCCTTT
AGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATTTATTACATCAGATGAAGCATCAAC
CTATTGTTATTGTGTCTGGTTTGGCAAAAGGAACCGATGCATTAGCTCATCATTATGCATTACGTAACGACATCCCTACA
ATAGCTGTATTGGGCTTTGGTCATTTTCACCATTATCCTAAACATACGCAATCCCTAAGAACTCATATTGATAAATATGC
GGCGGGTTTAATTATCAGCGAATATCCACCACCAACTGCTCCAGCAAAATTTAGATTTCCTGAACGCAATCGTATCATAA
GTGGCTTAAGTAAAGGGGTGCTCGTCACAGAGGCGAAAGAACGAAGCGGTGCATTAATCACGTTAGATCAAGCGTTAGAA
CAAAATCGTAATGTTTATGTTTTACCTGGGGATATGTTTAATCCCAATACGAAAGGAAATTTATTACGCGTAAAAGAAGG
AGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.281

99.65

0.521
  dprA Staphylococcus aureus N315

51.93

99.65

0.517