Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OHA38_RS30070 Genome accession   NZ_CP109157
Coordinates   6632324..6633952 (+) Length   542 a.a.
NCBI ID   WP_124716124.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01732     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6627324..6638952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA38_RS30040 (OHA38_29995) lepB 6628007..6628903 (+) 897 WP_266499833.1 signal peptidase I -
  OHA38_RS30045 (OHA38_30000) lepB 6629144..6630088 (+) 945 WP_266623518.1 signal peptidase I -
  OHA38_RS30050 (OHA38_30005) lepB 6630141..6630890 (+) 750 WP_124716127.1 signal peptidase I -
  OHA38_RS30055 (OHA38_30010) - 6630880..6631368 (+) 489 WP_124716126.1 NUDIX hydrolase -
  OHA38_RS30060 (OHA38_30015) - 6631433..6631741 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  OHA38_RS30065 (OHA38_30020) - 6631965..6632324 (+) 360 WP_124716125.1 YraN family protein -
  OHA38_RS30070 (OHA38_30025) comM 6632324..6633952 (+) 1629 WP_124716124.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OHA38_RS30075 (OHA38_30030) dprA 6633949..6635232 (+) 1284 WP_124716123.1 DNA-processing protein DprA -
  OHA38_RS30080 (OHA38_30035) whiG 6635473..6636309 (+) 837 WP_124716122.1 RNA polymerase sigma factor WhiG -
  OHA38_RS30085 (OHA38_30040) - 6636428..6636994 (+) 567 WP_124717322.1 TetR/AcrR family transcriptional regulator -
  OHA38_RS30090 (OHA38_30045) - 6637210..6637785 (-) 576 Protein_5933 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 55953.38 Da        Isoelectric Point: 7.2299

>NTDB_id=671672 OHA38_RS30070 WP_124716124.1 6632324..6633952(+) (comM) [Streptomyces sp. NBC_01732]
MGFARACSVALVGVEGVVVEVQADLEAGVAAFTLVGLPDKSLVESRDRVRAAVANSGAEWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERIDPASIADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYRQVVVPEQTAGEAALVPGVSVLGVRS
LRQLIAVLCDEPVPDERQAHDEGRPDTMLAGLMVPGAGIGTGLARGAGQGDGHLPDLADVAGQERPRMALEVAAAGGHHL
LLSGPPGAGKTMLAERLPAILPELTRKESLEVTAVHSVAGILPPGEPLVSRPPYCAPHHSATMQSLIGGGNGLPRPGAVS
LAHRGILFLDEAPEFSVRALDALRQPLESGHVVVARSAGVVRLPARFLMALAANPCPCGRHSLSGAGCECPPSAVRRYQA
RLSGPLLDRVDLRVLVDPVRREDLMGQGGRGESTAAVAARVRQARARAAARLAGTAWSTNSEVPGHELRTRLVAAPGALM
EAERDMERGLLTARGLDRVLRVAWTVADLRGADRPDASDVAVALELRTGIPRGALMNAGTQT

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=671672 OHA38_RS30070 WP_124716124.1 6632324..6633952(+) (comM) [Streptomyces sp. NBC_01732]
ATGGGGTTCGCGCGGGCGTGCTCGGTGGCGCTGGTCGGCGTCGAGGGTGTGGTGGTGGAGGTCCAGGCGGACCTGGAGGC
GGGGGTGGCCGCGTTCACCCTGGTGGGGCTGCCGGACAAGAGCCTGGTGGAGAGCCGCGACCGGGTCAGGGCCGCGGTGG
CGAACTCGGGGGCCGAGTGGCCGCAGAAGAAGCTCACGGTGGGCCTGTCGCCGGCCTCGGTGCCGAAGGGCGGATCCGGG
TTCGATCTCGCCGTCGCCTGTGCGGTGCTGGGGGCGGCCGAGCGGATCGATCCGGCTTCCATCGCCGATGTGGTGATGAT
CGGTGAGCTGGGGCTCGACGGCCGGGTGCGGCCGGTGCGCGGGGTGCTGCCCGCCGTGCTCGCCGCGGCCGAGGCCGGAT
ACCGGCAGGTCGTCGTGCCGGAACAGACCGCGGGCGAGGCGGCGCTGGTCCCCGGAGTCTCCGTCCTCGGGGTACGGAGC
CTGCGGCAGCTGATCGCGGTGCTCTGCGACGAGCCGGTGCCCGACGAGCGGCAGGCACACGACGAGGGGCGCCCCGACAC
CATGCTGGCCGGGCTGATGGTGCCCGGCGCGGGCATCGGCACCGGCCTCGCCCGCGGCGCCGGGCAGGGCGACGGACATC
TGCCGGATCTGGCGGACGTGGCGGGGCAGGAGCGGCCCCGCATGGCTCTTGAGGTCGCCGCCGCGGGCGGTCACCACCTC
CTGCTCTCGGGGCCGCCGGGAGCAGGCAAGACCATGCTGGCCGAGCGGCTGCCGGCCATCCTGCCGGAGCTGACCAGGAA
GGAATCCCTGGAGGTGACCGCGGTCCACTCGGTGGCGGGCATCCTGCCGCCGGGGGAGCCCCTGGTCAGCCGGCCGCCCT
ACTGCGCACCCCACCACTCGGCGACGATGCAGTCGCTGATCGGCGGGGGCAACGGACTGCCGAGGCCCGGTGCGGTCTCG
CTGGCTCATCGGGGAATTCTTTTTCTGGACGAGGCGCCCGAATTCTCCGTGCGGGCGCTGGACGCGCTGCGCCAGCCGCT
GGAATCGGGGCATGTGGTGGTGGCACGGAGCGCCGGAGTGGTGCGGCTGCCCGCCAGATTTCTGATGGCGCTGGCGGCCA
ACCCGTGCCCGTGCGGCCGGCACAGCCTCAGCGGCGCCGGCTGCGAATGCCCGCCGTCCGCGGTCAGGCGCTACCAGGCG
AGACTCTCCGGGCCGCTGCTCGACCGGGTGGATCTGCGGGTGCTCGTCGACCCGGTCAGGCGTGAGGACCTGATGGGGCA
GGGCGGCCGGGGCGAGTCGACGGCCGCGGTGGCGGCCCGGGTCCGGCAGGCCAGGGCGCGGGCCGCGGCGCGGCTCGCGG
GCACCGCGTGGTCCACCAACAGCGAGGTGCCCGGCCATGAGTTGCGGACCAGGCTGGTCGCGGCCCCGGGCGCGCTCATG
GAGGCCGAGCGGGACATGGAACGCGGCCTGCTCACCGCGCGGGGCCTGGACCGGGTGCTCAGAGTGGCGTGGACGGTCGC
CGATCTGCGCGGCGCCGACCGCCCGGATGCCTCCGACGTCGCGGTGGCGCTGGAACTGCGCACCGGGATTCCGCGGGGTG
CCCTGATGAACGCCGGGACGCAGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(431-527)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-423)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.546

94.649

0.384
  comM Vibrio cholerae strain A1552

40.546

94.649

0.384
  comM Vibrio campbellii strain DS40M4

39.024

98.339

0.384
  comM Acinetobacter baylyi ADP1

38.068

97.417

0.371