Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA15_RS08940 Genome accession   NZ_CP094733
Coordinates   1889154..1889744 (-) Length   196 a.a.
NCBI ID   WP_262619593.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain IVB6194     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1884154..1894744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA15_RS08885 (MUA15_08855) - 1884315..1884506 (-) 192 WP_002456379.1 hypothetical protein -
  MUA15_RS08890 (MUA15_08860) - 1884506..1884880 (-) 375 WP_002470844.1 hypothetical protein -
  MUA15_RS08895 (MUA15_08865) - 1884867..1885283 (-) 417 WP_002470845.1 DUF1064 domain-containing protein -
  MUA15_RS08900 (MUA15_08870) - 1885294..1885518 (-) 225 WP_002456377.1 DUF3269 family protein -
  MUA15_RS08905 (MUA15_08875) - 1885487..1885717 (-) 231 WP_002504786.1 hypothetical protein -
  MUA15_RS08910 (MUA15_08880) - 1885714..1886961 (-) 1248 WP_002504787.1 DnaB-like helicase C-terminal domain-containing protein -
  MUA15_RS08915 (MUA15_08885) - 1886951..1887304 (-) 354 WP_070653562.1 hypothetical protein -
  MUA15_RS08920 (MUA15_08890) - 1887310..1888038 (-) 729 WP_262619589.1 DnaD domain protein -
  MUA15_RS08925 (MUA15_08895) - 1888038..1888241 (-) 204 WP_049387177.1 helix-turn-helix domain-containing protein -
  MUA15_RS08930 (MUA15_08900) - 1888248..1888478 (-) 231 WP_262619590.1 helix-turn-helix domain-containing protein -
  MUA15_RS08935 (MUA15_08905) - 1888456..1889142 (-) 687 WP_262619592.1 putative HNHc nuclease -
  MUA15_RS08940 (MUA15_08910) ssbA 1889154..1889744 (-) 591 WP_262619593.1 single-stranded DNA-binding protein Machinery gene
  MUA15_RS08945 (MUA15_08915) - 1889747..1890370 (-) 624 WP_262619594.1 ERF family protein -
  MUA15_RS08950 (MUA15_08920) - 1890363..1890587 (-) 225 WP_262619595.1 DUF2483 domain-containing protein -
  MUA15_RS08955 (MUA15_08925) - 1890559..1890834 (-) 276 WP_103433361.1 chordopoxvirus fusion protein -
  MUA15_RS08960 (MUA15_08930) - 1890894..1891070 (-) 177 WP_002456867.1 hypothetical protein -
  MUA15_RS08965 (MUA15_08935) - 1891128..1891337 (-) 210 WP_046026347.1 hypothetical protein -
  MUA15_RS08970 (MUA15_08940) - 1891350..1892066 (-) 717 WP_002468739.1 phage repressor protein -
  MUA15_RS08975 (MUA15_08945) - 1892080..1892295 (-) 216 WP_001830251.1 transcriptional regulator -
  MUA15_RS08980 (MUA15_08950) - 1892492..1893103 (+) 612 WP_002468741.1 LexA family transcriptional regulator -
  MUA15_RS08985 (MUA15_08955) - 1893159..1894082 (+) 924 WP_002470864.1 DUF5067 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22383.05 Da        Isoelectric Point: 6.3654

>NTDB_id=671543 MUA15_RS08940 WP_262619593.1 1889154..1889744(-) (ssbA) [Staphylococcus epidermidis strain IVB6194]
MINRVVLAGRLTKDPEFRQTASGVSVTTFTLAVNRTFKNKNGEREADFINVVVFRQQAENVNNYLSKGSLAGVDGRIQSR
SYDNNEGRRVFVTEVVADNVQFLDSGNKNNNQKGNYQQQTNNYQQNSNYQPNNNYQSPQQNNSYQPPQQNQNSYQQPQQQ
NASYQPPQQNQQQNQQQNPFANANGPLDIQDEDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=671543 MUA15_RS08940 WP_262619593.1 1889154..1889744(-) (ssbA) [Staphylococcus epidermidis strain IVB6194]
ATGATAAACAGAGTAGTTTTAGCAGGTAGATTAACGAAAGATCCAGAGTTCAGACAAACAGCAAGTGGAGTAAGTGTAAC
CACATTTACATTAGCAGTAAATAGAACATTCAAAAACAAAAACGGTGAAAGAGAAGCAGATTTTATCAATGTAGTTGTAT
TTAGACAACAAGCAGAAAACGTTAATAACTATCTTTCTAAAGGCTCATTAGCTGGAGTAGATGGACGTATTCAATCACGA
AGTTATGACAATAACGAAGGGCGACGTGTTTTTGTGACGGAAGTTGTAGCAGATAATGTTCAATTCTTAGATAGTGGAAA
CAAAAATAACAACCAAAAAGGTAATTATCAACAGCAAACTAACAACTACCAACAAAATAGTAACTATCAACCCAATAATA
ATTACCAATCACCTCAACAGAACAATAGCTATCAACCACCGCAGCAAAATCAAAATAGTTACCAACAACCACAACAACAG
AATGCAAGTTACCAACCACCTCAACAGAACCAACAACAAAATCAACAACAAAATCCATTCGCTAACGCTAATGGTCCGTT
AGATATTCAAGATGAAGATTTACCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.49

100

0.495
  ssb Latilactobacillus sakei subsp. sakei 23K

46.429

100

0.464