Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG909_RS22630 Genome accession   NZ_CP109132
Coordinates   5272832..5273479 (-) Length   215 a.a.
NCBI ID   WP_326699843.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01754     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5267832..5278479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG909_RS22610 (OG909_22620) atpD 5268011..5269453 (+) 1443 WP_326699840.1 F0F1 ATP synthase subunit beta -
  OG909_RS22615 (OG909_22625) - 5269563..5269937 (+) 375 WP_326699841.1 F0F1 ATP synthase subunit epsilon -
  OG909_RS22620 (OG909_22630) - 5270095..5270541 (+) 447 WP_326701767.1 DUF2550 domain-containing protein -
  OG909_RS22625 (OG909_22635) - 5270777..5272663 (-) 1887 WP_326699842.1 glycoside hydrolase family 18 chitinase -
  OG909_RS22630 (OG909_22640) vraR 5272832..5273479 (-) 648 WP_326699843.1 response regulator transcription factor Regulator
  OG909_RS22635 (OG909_22645) - 5273476..5274666 (-) 1191 WP_326699844.1 histidine kinase -
  OG909_RS22640 (OG909_22650) - 5274818..5275378 (+) 561 WP_326699845.1 hypothetical protein -
  OG909_RS22645 (OG909_22655) - 5275379..5275951 (-) 573 WP_326699846.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG909_RS22650 (OG909_22660) - 5275974..5276723 (-) 750 WP_326699847.1 ABC transporter permease -
  OG909_RS22655 (OG909_22665) - 5276732..5277514 (-) 783 WP_326699848.1 ATP-binding cassette domain-containing protein -
  OG909_RS22660 (OG909_22670) - 5277596..5278237 (+) 642 WP_326699849.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22458.90 Da        Isoelectric Point: 4.9253

>NTDB_id=671432 OG909_RS22630 WP_326699843.1 5272832..5273479(-) (vraR) [Streptomyces sp. NBC_01754]
MTIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEAAVRLARELRPDVVLMDVQMPRLDGVSATRQVVAERLADVLV
LTTFDLDAYVFGALRAGAAGFLLKNTDARDLLDAVRTVAGGEGTIAPAVTRRLIAEFAGATASRDGGPDPAVLDALTRRE
REVLGCLGQGLSNAEIAGRLTMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGL

Nucleotide


Download         Length: 648 bp        

>NTDB_id=671432 OG909_RS22630 WP_326699843.1 5272832..5273479(-) (vraR) [Streptomyces sp. NBC_01754]
GTGACGATCCGGGTACTGGTCGCCGAGGACCAGTCGGCGGTGCGCGCGGGTCTGGTGCTGATCCTGGGCAGCGCCCCGGA
CATCGAGGTGGTGGGCGAGGCCGCGGACGGTGAGGCCGCCGTGCGGCTCGCCCGCGAACTACGCCCGGACGTGGTGCTGA
TGGATGTGCAGATGCCCCGGCTGGACGGGGTGTCCGCGACGCGTCAGGTGGTGGCCGAGCGGCTCGCCGACGTCCTGGTG
CTGACGACGTTCGACCTGGACGCGTACGTGTTCGGGGCGCTGCGCGCGGGTGCGGCGGGGTTCCTGCTGAAGAACACCGA
CGCACGCGACCTGCTGGACGCCGTCCGCACCGTGGCGGGCGGTGAGGGAACGATCGCCCCGGCGGTGACCCGCCGGCTGA
TCGCGGAGTTCGCGGGAGCGACCGCCTCACGGGACGGCGGACCGGATCCGGCGGTGCTCGACGCGCTGACCCGGCGGGAG
CGCGAGGTGCTCGGCTGCCTGGGCCAGGGGCTGTCGAACGCGGAGATCGCCGGGCGCCTCACGATGGCGGAGGCAACGGT
GAAGACGCACGTCAGCAGGCTCCTGGGGAAGCTGGGACTGCGCAGCCGGGTGCAAGCGGCGGTCCTCGCCCAGGAGTTGG
GTCTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.014

100

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

39.64

100

0.409