Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KF707C_RS04390 Genome accession   NZ_AP014862
Coordinates   942451..944052 (-) Length   533 a.a.
NCBI ID   WP_004420122.1    Uniprot ID   -
Organism   Metapseudomonas furukawaii strain KF707     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 937451..949052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KF707C_RS04365 (KF707C_8610) pilV 938123..938710 (-) 588 WP_004420128.1 type IV pilus modification protein PilV -
  KF707C_RS04370 (KF707C_8620) - 938701..939195 (-) 495 WP_036991271.1 GspH/FimT family pseudopilin -
  KF707C_RS04375 - 939276..939809 (-) 534 WP_036991269.1 GspH/FimT family pseudopilin -
  KF707C_RS04380 (KF707C_8630) thiO 939868..940977 (+) 1110 WP_004420126.1 glycine oxidase ThiO -
  KF707C_RS04385 (KF707C_8650) pilR 941111..942448 (-) 1338 WP_004420124.1 sigma-54 dependent transcriptional regulator Regulator
  KF707C_RS04390 (KF707C_8660) pilS 942451..944052 (-) 1602 WP_004420122.1 PAS domain-containing sensor histidine kinase Regulator
  KF707C_RS04395 (KF707C_8670) - 944042..944278 (-) 237 WP_004420120.1 PP0621 family protein -
  KF707C_RS04400 (KF707C_8680) - 944434..946065 (+) 1632 WP_004420118.1 NAD+ synthase -
  KF707C_RS04405 (KF707C_8690) - 946170..947189 (-) 1020 WP_004420117.1 outer membrane protein assembly factor BamD -
  KF707C_RS04410 (KF707C_8700) rluD 947337..948308 (+) 972 WP_004420116.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KF707C_RS04415 (KF707C_8710) pgeF 948305..949030 (+) 726 WP_004420115.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 58928.86 Da        Isoelectric Point: 7.7937

>NTDB_id=67138 KF707C_RS04390 WP_004420122.1 942451..944052(-) (pilS) [Metapseudomonas furukawaii strain KF707]
MNAETLPAPSELSAQGRRIFRLYSLYRLLIGLTLVGLISSELDDQFMELARPELFRNAAWFYLIINSLIAVAVPRPRHMV
QVFSLALVDVLILSCLFYAGGGTPSGVANLIVVSVAISNILLRGRIGLLVAAVATLALIYLTFYLSLSHPRANTQFVQAG
GFGALCFAAALFLQGLSRRLQLSETLAEQRAADVASLEALNAQILERMRTGILVLDPRNRILLANNGALALLGRDELQGR
NLAVQCPALLGSLEQWLANPTLRPQSLQAFADGPTLQPSFVPLPRGDQQNTLVFLDDISQIAQQAQQLKLASLGRLTAGI
AHEIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLTRFASEFRGSA
APGQTLHLHTLGSTLQTRMDPHQLTQVLTNLVQNGLRYSARKHGQGQVWLRLFRDPESDLPVLEVEDDGEGVPPEQVHNI
FEPFFTTENKGTGLGLYLSRELCESNQARLDYKPREAGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=67138 KF707C_RS04390 WP_004420122.1 942451..944052(-) (pilS) [Metapseudomonas furukawaii strain KF707]
GTGAACGCTGAGACGCTCCCCGCCCCCTCCGAACTCAGCGCCCAGGGGCGACGGATATTCCGCCTCTACAGCCTCTACCG
GCTGCTGATCGGCCTCACCCTGGTGGGGCTGATCTCCAGTGAACTCGACGATCAGTTCATGGAGCTGGCTCGACCCGAGC
TGTTCCGCAACGCCGCCTGGTTCTACCTGATCATCAACAGCCTGATCGCGGTGGCCGTGCCGCGCCCACGCCATATGGTG
CAGGTGTTCAGCCTGGCGCTGGTGGACGTGCTGATCCTGTCCTGCCTGTTCTACGCCGGCGGCGGCACTCCCAGCGGCGT
GGCCAACCTGATCGTCGTCTCGGTGGCCATCTCCAATATCCTCCTGCGCGGCCGCATCGGCCTGCTGGTGGCGGCGGTGG
CGACCCTCGCGCTGATCTACCTGACCTTCTACCTGAGCCTCAGCCATCCCAGGGCCAACACCCAGTTCGTCCAGGCCGGC
GGCTTCGGCGCCCTCTGCTTCGCCGCCGCACTCTTCCTCCAGGGCCTCAGCCGGCGCCTGCAGCTGAGCGAAACCCTGGC
CGAGCAGCGTGCCGCCGACGTGGCCAGCCTGGAAGCGCTGAATGCGCAGATCCTGGAACGCATGCGCACCGGAATCCTGG
TGCTGGACCCGCGCAACCGGATCCTGCTGGCCAACAACGGTGCCCTGGCCTTGCTGGGTCGCGACGAACTCCAGGGCCGC
AATCTGGCGGTGCAATGCCCGGCGCTGCTGGGGAGCCTCGAACAGTGGCTGGCCAATCCCACCCTGCGCCCCCAGAGCCT
CCAGGCCTTCGCCGATGGCCCCACGCTGCAGCCCAGCTTCGTGCCGCTGCCCCGTGGGGACCAGCAGAACACCCTGGTCT
TCCTCGACGACATTTCCCAGATCGCCCAGCAGGCCCAGCAACTCAAGCTCGCCTCCCTCGGTCGCCTCACCGCCGGCATC
GCCCACGAGATCCGCAATCCGCTGGGCGCCATCAGCCACGCCGCCCAGCTGCTGCAGGAGTCCGAGGAGCTGGACGGCCC
GGATCGGCGCCTGGCGCAGATCATCCAGGACCACTCCCGGCGCATGAACCTGGTGATCGAGAACGTCCTCCAGCTGTCGC
GGCGCCGCCAGTCGGAGCCCCAGCTGCTGGACCTGAAGTACTGGCTGACCCGTTTCGCCAGTGAGTTCCGCGGCTCGGCT
GCCCCCGGCCAGACCCTGCACCTCCACACCCTCGGCAGCACCCTGCAGACCCGCATGGACCCGCACCAGCTGACCCAGGT
GCTGACCAACCTGGTGCAGAACGGCCTGCGCTACAGCGCCAGGAAGCACGGCCAGGGCCAGGTCTGGCTCAGGCTGTTCC
GCGACCCGGAAAGCGACCTGCCGGTGCTGGAAGTGGAAGACGACGGCGAAGGCGTCCCCCCCGAACAGGTGCACAACATC
TTCGAACCCTTCTTCACCACCGAGAACAAGGGCACCGGCCTCGGCCTCTATCTCTCCCGCGAACTCTGCGAGAGCAACCA
GGCCCGCCTTGACTACAAGCCGCGGGAGGCGGGCGGAAGCTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)

PAS domain (PAS_8)

(203-243)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.355

100

0.674

Multiple sequence alignment