Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KF707C_RS04385 Genome accession   NZ_AP014862
Coordinates   941111..942448 (-) Length   445 a.a.
NCBI ID   WP_004420124.1    Uniprot ID   A0AAD1FEK2
Organism   Metapseudomonas furukawaii strain KF707     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 930088..940977 941111..942448 flank 134


Gene organization within MGE regions


Location: 930088..942448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KF707C_RS04335 (KF707C_8550) brnA 930088..930327 (+) 240 WP_004420134.1 type II toxin-antitoxin system BrnA family antitoxin -
  KF707C_RS04340 (KF707C_8560) ispH 930431..931375 (+) 945 WP_004420133.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KF707C_RS04345 (KF707C_8570) - 931432..931851 (-) 420 WP_192817691.1 type IV pilin protein -
  KF707C_RS04350 (KF707C_8580) - 931872..936677 (-) 4806 WP_004420131.1 PilC/PilY family type IV pilus protein -
  KF707C_RS04355 - 936700..937182 (-) 483 WP_051050677.1 PilX N-terminal domain-containing pilus assembly protein -
  KF707C_RS04360 (KF707C_8600) - 937179..938111 (-) 933 WP_004420129.1 PilW family protein -
  KF707C_RS04365 (KF707C_8610) pilV 938123..938710 (-) 588 WP_004420128.1 type IV pilus modification protein PilV -
  KF707C_RS04370 (KF707C_8620) - 938701..939195 (-) 495 WP_036991271.1 GspH/FimT family pseudopilin -
  KF707C_RS04375 - 939276..939809 (-) 534 WP_036991269.1 GspH/FimT family pseudopilin -
  KF707C_RS04380 (KF707C_8630) thiO 939868..940977 (+) 1110 WP_004420126.1 glycine oxidase ThiO -
  KF707C_RS04385 (KF707C_8650) pilR 941111..942448 (-) 1338 WP_004420124.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49588.98 Da        Isoelectric Point: 5.6293

>NTDB_id=67137 KF707C_RS04385 WP_004420124.1 941111..942448(-) (pilR) [Metapseudomonas furukawaii strain KF707]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEARDWLAREAFDLCLTDMRLPDGTGLELVQHIQQRHPLVPVAM
ITAYGSLDTAVNALKAGAFDFVTKPVDLGRLRELVNTALRLSTPDGEEPPVDGRLLGQSPPMTALRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPLLAEAM
LKRLAQQSGLPAATLAPEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLAEASGVAEAGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=67137 KF707C_RS04385 WP_004420124.1 941111..942448(-) (pilR) [Metapseudomonas furukawaii strain KF707]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAACCCGACATCCGCGAACTGCTGGAAATCACCCTCGGGCGAATGAA
GCTCGACACCCGCAGCGCCCGCAACCTCAAGGAAGCCCGCGACTGGCTGGCCCGGGAAGCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGAGCTGGTGCAGCACATCCAGCAGCGGCATCCGCTGGTACCGGTGGCCATG
ATCACCGCCTACGGCAGCCTGGATACCGCGGTGAACGCCCTCAAGGCCGGCGCCTTCGATTTCGTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGGGAGCTGGTCAACACCGCCCTGCGCCTCAGCACGCCGGACGGCGAGGAGCCGCCGGTGGATGGCC
GCCTGCTGGGCCAGTCGCCGCCCATGACGGCGCTGCGCAAGCAGATCCAGAAGCTCGCCCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAATCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAACAGGGGCCACGGGCGGAGCGCCCCTT
CGTCCCGGTGAACTGCGGCGCCATCCCCTCCGAACTGATGGAAAGCGAATTCTTCGGCCACAGGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAGGTGGCCGACCTGCCC
CTGCCGATGCAGGTGAAGCTGCTGCGGGCCATCCAGGAAAAGGCCGTGCGTGCGGTGGGCGGCCAGCAGGAGGTGGTGGT
GGACGTGCGCATCCTCAGCGCCACCCACAAGGACCTCGCCGCCGAAGTGGCCGCCGGTCGTTTTCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAACTCAGCGTGCCGCCCCTGCGGGAGCGCCGCGAGGACATCCCGCTGCTGGCCGAGGCCATG
CTCAAGCGCCTGGCCCAGCAGAGCGGCCTGCCCGCCGCGACCCTGGCCCCCGAGGCCCTGGACAAGCTCAAGTGCTACCG
CTTTCCCGGCAACGTGCGGGAGCTGGAGAACATGCTGGAGCGCGCCTACACCCTCTGCGAGGACGACCAGATCCAGGCCC
GCGACCTCCGACTGGCCGAGGCCAGCGGCGTCGCGGAGGCCGGCGAGGCCAGCCTGGCCCAGATCGACAACCTGGAGGAC
TACCTCGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAAGAGACCCGCTGGAACCGGACGGCGGCGGCGCAGCG
CCTGGGCCTGACCTTCCGTTCCATGCGCTATCGCCTGAAGAAGCTGGGTATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.966

100

0.87
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517

Multiple sequence alignment