Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   MUA53_RS08280 Genome accession   NZ_CP094724
Coordinates   1672992..1673576 (+) Length   194 a.a.
NCBI ID   WP_143129548.1    Uniprot ID   -
Organism   Staphylococcus hominis strain IVB6247     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667992..1678576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA53_RS08250 (MUA53_08235) - 1668869..1670236 (-) 1368 WP_071860039.1 isochorismate synthase -
  MUA53_RS08255 (MUA53_08240) - 1670417..1671355 (+) 939 WP_002448221.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  MUA53_RS08260 (MUA53_08245) - 1671400..1671954 (-) 555 WP_155974880.1 GNAT family N-acetyltransferase -
  MUA53_RS08265 (MUA53_08250) - 1672098..1672310 (+) 213 WP_155974881.1 TM2 domain-containing protein -
  MUA53_RS08270 (MUA53_08255) - 1672400..1672498 (+) 99 WP_017175792.1 SAR1012 family small protein -
  MUA53_RS08275 (MUA53_08260) - 1672566..1672784 (-) 219 WP_070718559.1 IDEAL domain-containing protein -
  MUA53_RS08280 (MUA53_08265) comK/comK1 1672992..1673576 (+) 585 WP_143129548.1 competence protein ComK Regulator
  MUA53_RS08295 (MUA53_08280) - 1674106..1674726 (-) 621 WP_155974916.1 hypothetical protein -
  MUA53_RS08300 (MUA53_08285) - 1674814..1676055 (-) 1242 WP_155974917.1 Fic family protein -
  MUA53_RS08310 (MUA53_08295) - 1677473..1678462 (-) 990 WP_002488358.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22933.19 Da        Isoelectric Point: 9.5206

>NTDB_id=671339 MUA53_RS08280 WP_143129548.1 1672992..1673576(+) (comK/comK1) [Staphylococcus hominis strain IVB6247]
MTQFNKSPNTIYVIRKGDMVIRPTFDDHQQPNGSEILKFDTSREISPFKTQKIIERSCRFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLKNRKSKIVFANQESLTLNVSFHSLWHQYSNSIFYYYMIDKQ
ARMKSNNPDMPIDYEKTSLNIFEALSHYSLLEDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=671339 MUA53_RS08280 WP_143129548.1 1672992..1673576(+) (comK/comK1) [Staphylococcus hominis strain IVB6247]
ATGACTCAGTTCAATAAATCTCCTAATACGATTTATGTCATACGTAAAGGTGATATGGTGATTAGACCTACCTTTGATGA
TCATCAACAACCGAACGGCTCAGAAATCCTCAAATTCGATACCTCACGAGAAATAAGCCCTTTTAAAACTCAAAAAATTA
TTGAACGATCTTGTAGATTTTATGGCAATAACTACTTAAGCAAGAAAGCTGAAACTCAACGCATCGCTGGAATAACTAGT
AAACCTCCCATCCTTCTCACACCATTGTTTCCAACTTACTTTTTCCCAACACATTCAGACCGTTTAGAAGAAAATATATG
GATTAATATGCATTATATTTCTGATATTAAGCCATTAAAAAACAGAAAGAGTAAAATTGTCTTTGCTAATCAAGAATCAC
TAACATTAAATGTATCTTTTCATAGTTTATGGCATCAATATTCTAATTCTATTTTCTATTACTATATGATTGATAAACAA
GCAAGAATGAAGTCTAATAATCCAGATATGCCAATCGATTATGAAAAAACATCTTTAAATATCTTTGAGGCACTTTCACA
CTATTCTTTATTAGAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

75

94.845

0.711
  comK/comK1 Staphylococcus aureus N315

75

94.845

0.711