Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA53_RS03830 Genome accession   NZ_CP094724
Coordinates   782311..782706 (+) Length   131 a.a.
NCBI ID   WP_002448700.1    Uniprot ID   -
Organism   Staphylococcus hominis strain IVB6247     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 777311..787706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA53_RS03800 (MUA53_03790) atpD 777416..778828 (+) 1413 WP_017175135.1 F0F1 ATP synthase subunit beta -
  MUA53_RS03805 (MUA53_03795) - 778850..779251 (+) 402 WP_002448708.1 F0F1 ATP synthase subunit epsilon -
  MUA53_RS03810 (MUA53_03800) - 779560..779790 (+) 231 WP_002448711.1 DUF1146 family protein -
  MUA53_RS03815 (MUA53_03805) murA 779897..781162 (+) 1266 WP_155975495.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA53_RS03820 (MUA53_03810) fabZ 781190..781627 (+) 438 WP_002448673.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA53_RS03825 (MUA53_03815) - 781677..782117 (-) 441 WP_087436801.1 YwpF-like family protein -
  MUA53_RS03830 (MUA53_03820) ssb 782311..782706 (+) 396 WP_002448700.1 single-stranded DNA-binding protein Machinery gene
  MUA53_RS03835 (MUA53_03825) - 783111..783857 (+) 747 WP_262619234.1 transglycosylase family protein -
  MUA53_RS03840 (MUA53_03830) tenA 784250..784939 (+) 690 WP_019835613.1 thiaminase II -
  MUA53_RS03845 (MUA53_03835) thiD 784932..785753 (+) 822 WP_002455065.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA53_RS03850 (MUA53_03840) thiM 785746..786534 (+) 789 WP_002448660.1 hydroxyethylthiazole kinase -
  MUA53_RS03855 (MUA53_03845) thiE 786537..787175 (+) 639 WP_048787784.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15163.35 Da        Isoelectric Point: 7.1326

>NTDB_id=671320 MUA53_RS03830 WP_002448700.1 782311..782706(+) (ssb) [Staphylococcus hominis strain IVB6247]
MLNKIVIVGRMTKDAKIYNNEEVKIATFSVATERNYKDENDEIACDYILCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDNSLNTDTYPFDHLELMNIK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=671320 MUA53_RS03830 WP_002448700.1 782311..782706(+) (ssb) [Staphylococcus hominis strain IVB6247]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATAATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGACTACATATTGTGTAAAGCATTTG
GTAAGATGGCCAGTAACATTGAAAAATATACTTCTCAAGGATCATTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTAACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAACTCACTAAATACAGACACTTATCCATTTGATCATCTCGAATTAATGAATATAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725