Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA51_RS04560 Genome accession   NZ_CP094723
Coordinates   933086..933958 (+) Length   290 a.a.
NCBI ID   WP_262560681.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6214     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 928086..938958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA51_RS04530 (MUA51_04525) ylqF 928137..929021 (+) 885 WP_262560675.1 ribosome biogenesis GTPase YlqF -
  MUA51_RS04535 (MUA51_04530) - 929005..929790 (+) 786 WP_262560676.1 ribonuclease HII -
  MUA51_RS04540 (MUA51_04535) - 929992..930183 (+) 192 WP_262560677.1 hypothetical protein -
  MUA51_RS04545 (MUA51_04540) - 930402..930671 (+) 270 WP_262560678.1 hypothetical protein -
  MUA51_RS04550 (MUA51_04545) sucC 930891..932057 (+) 1167 WP_262560679.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA51_RS04555 (MUA51_04550) sucD 932079..932987 (+) 909 WP_095116363.1 succinate--CoA ligase subunit alpha -
  MUA51_RS04560 (MUA51_04555) dprA 933086..933958 (+) 873 WP_262560681.1 DNA-processing protein DprA Machinery gene
  MUA51_RS04565 (MUA51_04560) topA 934061..936130 (+) 2070 WP_262560683.1 type I DNA topoisomerase -
  MUA51_RS04570 (MUA51_04565) trmFO 936153..937460 (+) 1308 WP_262560685.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA51_RS04575 (MUA51_04570) xerC 937705..938598 (+) 894 WP_262560686.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32859.70 Da        Isoelectric Point: 8.4749

>NTDB_id=671291 MUA51_RS04560 WP_262560681.1 933086..933958(+) (dprA) [Staphylococcus sp. IVB6214]
MTNNLTLEQLLLLLVYSGFTTRQIHKFFPNVESIKGNQSTLIDTLESHRDKSIQGKINQLRDIDLRMIEQQLQNEYISII
SLNAPNYPPHLKHIYDPPPILFCRGQLQLLTHTQTLAIVGSRKHTQYTNKVLNNIMPHFASAHLTIVSGLAKGADACAHQ
LAIRHGCSTIGVLGFGHHHHYPKETKSIRDYMDRVHLTISEYPPFVSPAAFRFPERNRLISGLSKGVFITEAKERSGALI
TVDHALEQNRNVYVLPGDMYNPFTKGNMLRIQEGAEVVLSENDILKDYCQ

Nucleotide


Download         Length: 873 bp        

>NTDB_id=671291 MUA51_RS04560 WP_262560681.1 933086..933958(+) (dprA) [Staphylococcus sp. IVB6214]
ATGACAAATAACTTAACATTAGAACAATTGCTTTTGCTCTTAGTATATAGTGGATTTACGACACGACAAATCCACAAATT
TTTCCCGAACGTAGAGTCAATAAAGGGGAACCAATCGACATTAATTGACACACTAGAGTCACATCGAGATAAAAGCATTC
AAGGAAAAATCAATCAATTACGTGATATAGACTTACGAATGATTGAGCAACAACTACAAAATGAATATATCAGTATCATC
AGTTTAAACGCTCCGAATTATCCGCCACATTTAAAACACATTTATGATCCTCCACCTATTCTTTTTTGTCGTGGACAACT
GCAACTTTTAACACATACTCAAACACTTGCCATTGTGGGTTCGCGCAAGCATACTCAATATACGAACAAAGTATTAAATA
ATATCATGCCACATTTCGCTTCAGCACATTTAACGATTGTATCAGGGCTTGCTAAAGGTGCAGATGCATGTGCACATCAA
TTGGCGATTCGACATGGATGTTCGACGATTGGTGTGTTAGGATTCGGGCATCATCATCACTATCCGAAAGAAACGAAGTC
CATACGGGACTATATGGATCGTGTCCATTTAACGATAAGTGAATATCCACCATTTGTATCACCAGCAGCTTTTCGTTTTC
CCGAAAGGAATCGTCTTATTAGTGGGCTTTCCAAGGGTGTATTTATCACTGAAGCAAAAGAACGGAGTGGTGCACTGATT
ACGGTCGATCACGCACTTGAACAAAATCGCAACGTATATGTATTGCCGGGTGATATGTATAATCCATTTACAAAAGGGAA
TATGTTGAGAATTCAAGAAGGAGCAGAAGTCGTCTTGTCAGAAAATGATATTTTGAAGGATTATTGTCAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

49.648

97.931

0.486
  dprA Staphylococcus aureus MW2

49.648

97.931

0.486