Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA65_RS04430 Genome accession   NZ_CP094722
Coordinates   899796..900668 (+) Length   290 a.a.
NCBI ID   WP_262604934.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6218     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 894796..905668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA65_RS04400 (MUA65_04385) - 894980..895765 (+) 786 WP_262604928.1 ribonuclease HII -
  MUA65_RS04405 (MUA65_04390) - 895913..896296 (+) 384 WP_262605872.1 hypothetical protein -
  MUA65_RS04410 (MUA65_04395) - 896332..896955 (+) 624 WP_262609513.1 hypothetical protein -
  MUA65_RS04415 (MUA65_04400) - 897041..897310 (+) 270 WP_262604931.1 hypothetical protein -
  MUA65_RS04420 (MUA65_04405) sucC 897567..898733 (+) 1167 WP_262604932.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA65_RS04425 (MUA65_04410) sucD 898755..899663 (+) 909 WP_262609514.1 succinate--CoA ligase subunit alpha -
  MUA65_RS04430 (MUA65_04415) dprA 899796..900668 (+) 873 WP_262604934.1 DNA-processing protein DprA Machinery gene
  MUA65_RS04435 (MUA65_04420) topA 900771..902840 (+) 2070 WP_262604935.1 type I DNA topoisomerase -
  MUA65_RS04440 (MUA65_04425) trmFO 902861..904168 (+) 1308 WP_262604936.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA65_RS04445 (MUA65_04430) xerC 904492..905382 (+) 891 WP_262605875.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33150.52 Da        Isoelectric Point: 9.3223

>NTDB_id=671258 MUA65_RS04430 WP_262604934.1 899796..900668(+) (dprA) [Staphylococcus sp. IVB6218]
MTEPLSNKQLLLLLIYSGFTTRQIYRLFPDFEKLVGKKHILIERLEACRDRHIQAKVNTLKTIDIHVIEQQLITQNIHAV
SIDDSQYPHLLKYIYDPPPILFCRGKCQLLKHSNTLAIVGSRVHTQYTNKVLSDFMPHFAKAKLTIVSGLAKGADALAHE
IAIKNGCATIGVLGFGHLHHYPRDTRYLRDEMEKYHITISEYPPFVPPAKFRFPERNRIISGLSKGVFITEAKERSGALI
TVDQALQQNRNVYVLPGDIYNPYTKGNLLRIQEGAEIILSEKDIMKDYCQ

Nucleotide


Download         Length: 873 bp        

>NTDB_id=671258 MUA65_RS04430 WP_262604934.1 899796..900668(+) (dprA) [Staphylococcus sp. IVB6218]
ATGACAGAACCGTTATCAAATAAACAGCTACTTTTACTCCTCATTTATAGTGGTTTTACAACCCGCCAAATTTATAGATT
ATTCCCAGATTTTGAAAAACTTGTAGGTAAGAAACATATATTAATAGAAAGGCTTGAGGCATGTCGAGACAGACATATCC
AAGCTAAAGTAAATACGCTTAAAACTATAGATATCCATGTGATTGAACAACAATTGATTACTCAAAATATTCATGCTGTC
AGTATTGATGACTCCCAATATCCTCATTTATTAAAGTACATTTATGATCCACCACCTATTCTTTTCTGCAGAGGTAAATG
CCAACTTTTAAAACATTCCAATACACTTGCAATTGTAGGATCACGAGTACATACACAATATACGAACAAAGTATTAAGTG
ATTTTATGCCACATTTTGCAAAAGCGAAATTGACAATTGTTTCCGGTCTAGCAAAAGGTGCGGATGCACTTGCTCATGAA
ATTGCGATTAAAAATGGCTGTGCAACAATCGGTGTATTAGGCTTTGGACATTTACATCATTATCCAAGAGATACTAGATA
CTTACGTGATGAGATGGAGAAATATCATATAACAATCAGTGAATATCCGCCATTCGTTCCACCGGCAAAATTTCGTTTTC
CAGAACGAAATAGAATCATTAGTGGTCTTTCAAAAGGTGTTTTCATTACAGAGGCGAAAGAACGAAGTGGTGCACTAATT
ACAGTGGATCAAGCACTTCAACAAAATCGCAATGTGTATGTTTTACCGGGGGATATATATAATCCTTATACAAAAGGCAA
TTTGCTTAGAATTCAAGAAGGTGCTGAAATTATATTATCAGAAAAAGATATTATGAAAGATTATTGTCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

48.951

98.621

0.483
  dprA Staphylococcus aureus N315

48.601

98.621

0.479