Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA92_RS08170 Genome accession   NZ_CP094721
Coordinates   1639913..1640629 (+) Length   238 a.a.
NCBI ID   WP_262615428.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6227     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1634913..1645629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA92_RS08145 (MUA92_08145) - 1635215..1636198 (-) 984 WP_262559257.1 SdrH family protein -
  MUA92_RS08150 (MUA92_08150) - 1636409..1637206 (+) 798 WP_262615427.1 carbon-nitrogen family hydrolase -
  MUA92_RS08155 (MUA92_08155) - 1637861..1638427 (+) 567 WP_262559260.1 accessory gene regulator AgrB -
  MUA92_RS08160 (MUA92_08160) - 1638427..1638567 (+) 141 WP_229709407.1 cyclic lactone autoinducer peptide -
  MUA92_RS08165 (MUA92_08165) - 1638953..1639900 (+) 948 WP_262559262.1 GHKL domain-containing protein -
  MUA92_RS08170 (MUA92_08170) agrA 1639913..1640629 (+) 717 WP_262615428.1 LytTR family DNA-binding domain-containing protein Regulator
  MUA92_RS08175 (MUA92_08175) - 1640683..1641630 (-) 948 WP_262559264.1 carbohydrate kinase -
  MUA92_RS08180 (MUA92_08180) - 1641623..1643116 (-) 1494 WP_262559265.1 sucrose-6-phosphate hydrolase -
  MUA92_RS08185 (MUA92_08185) - 1643131..1644114 (-) 984 WP_262615429.1 LacI family DNA-binding transcriptional regulator -
  MUA92_RS08190 (MUA92_08190) - 1644301..1644525 (-) 225 WP_262559268.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27695.52 Da        Isoelectric Point: 5.6204

>NTDB_id=671245 MUA92_RS08170 WP_262615428.1 1639913..1640629(+) (agrA) [Staphylococcus sp. IVB6227]
MKIFICEDDPKQRARMENIINTYIMIEEKPMEIALSTDNPYELIEASKTSSDVGCYFLDIQLESDINGIKVASEIRQHDP
IGNIVYVTSHSELTYLTFVYKVAAMDFIFKDDPDQLQKRVIDCLETALNRLNLLTKEETVETLELKRGSGSEYVNYDDVM
FFESSPKSHRVIAHLDNRQVEFYGKLKELSQVDARFFRCHNSFVLNRHNIANVEPKERTVHFKNGEHCYVSVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=671245 MUA92_RS08170 WP_262615428.1 1639913..1640629(+) (agrA) [Staphylococcus sp. IVB6227]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAGCGTGCACGCATGGAAAACATCATCAACACATACATTATGATTGA
AGAAAAACCCATGGAAATCGCACTGTCAACGGACAATCCTTACGAACTGATAGAAGCCTCCAAAACGTCATCAGATGTTG
GCTGTTATTTTTTAGATATCCAATTAGAATCCGATATCAATGGCATTAAAGTCGCTAGTGAGATTCGGCAGCATGATCCG
ATTGGCAATATTGTTTACGTGACGAGTCATAGTGAACTCACATACTTAACATTTGTCTACAAAGTCGCTGCAATGGACTT
TATTTTCAAAGATGATCCTGATCAACTTCAAAAACGAGTCATCGATTGTTTAGAAACGGCGCTCAATCGCCTGAATTTGC
TAACTAAAGAAGAGACCGTAGAAACACTAGAGTTAAAGCGGGGGAGTGGTTCAGAATACGTCAATTATGATGATGTGATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTGTCATTGCACATTTGGACAATCGTCAAGTCGAATTTTATGGTAAGTTAAA
AGAGCTTTCACAAGTCGACGCACGATTCTTCCGCTGTCATAATAGCTTCGTCCTTAACCGACATAACATCGCCAATGTCG
AGCCAAAAGAGAGAACTGTTCACTTTAAAAATGGTGAACATTGTTATGTATCTGTGCGCAATATTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(153-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

76.05

100

0.761
  comE/comE1 Streptococcus equinus JB1

35.2

100

0.37