Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA92_RS06490 Genome accession   NZ_CP094721
Coordinates   1336866..1337738 (-) Length   290 a.a.
NCBI ID   WP_262615344.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6227     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1331866..1342738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA92_RS06475 (MUA92_06475) xerC 1332226..1333119 (-) 894 WP_262560686.1 tyrosine recombinase XerC -
  MUA92_RS06480 (MUA92_06480) trmFO 1333364..1334671 (-) 1308 WP_262560685.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA92_RS06485 (MUA92_06485) topA 1334694..1336763 (-) 2070 WP_262560683.1 type I DNA topoisomerase -
  MUA92_RS06490 (MUA92_06490) dprA 1336866..1337738 (-) 873 WP_262615344.1 DNA-processing protein DprA Machinery gene
  MUA92_RS06495 (MUA92_06495) sucD 1337837..1338745 (-) 909 WP_262615345.1 succinate--CoA ligase subunit alpha -
  MUA92_RS06500 (MUA92_06500) sucC 1338767..1339933 (-) 1167 WP_262560679.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA92_RS06505 (MUA92_06505) - 1340153..1340422 (-) 270 WP_262560678.1 hypothetical protein -
  MUA92_RS06510 (MUA92_06510) - 1340641..1340820 (-) 180 WP_262615346.1 hypothetical protein -
  MUA92_RS06515 (MUA92_06515) - 1341034..1341819 (-) 786 WP_262560676.1 ribonuclease HII -
  MUA92_RS06520 (MUA92_06520) ylqF 1341803..1342687 (-) 885 WP_262560675.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32868.71 Da        Isoelectric Point: 8.4777

>NTDB_id=671240 MUA92_RS06490 WP_262615344.1 1336866..1337738(-) (dprA) [Staphylococcus sp. IVB6227]
MTNNLTLEQLLLLLVYSGFTTRQIHKFFPNVESIKGNQSTLIDTLESHRDKSIQGKINQLRDIDLRMIEQQLQNEYISII
SLNAPNYPPHLKHIYDPPPILFCRGQLQLLTHTQTLAIVGSRKHTHYTNKVLNNIMPHFASAHLTIVSGLAKGADACAHQ
LAIRHGCSTIGVLGFGHHHHYPKETKSIRDYMDRVHLTISEYPPFVSPAAFRFPERNRLISGLSKGVFITEAKERSGALI
TVDHALEQNRNVYVLPGDMYNPFTKGNMLRIQEGAEVVLSENDILKDYCQ

Nucleotide


Download         Length: 873 bp        

>NTDB_id=671240 MUA92_RS06490 WP_262615344.1 1336866..1337738(-) (dprA) [Staphylococcus sp. IVB6227]
ATGACAAATAACTTAACATTAGAACAATTGCTTTTGCTCTTAGTATATAGTGGATTTACGACACGACAAATCCACAAATT
TTTCCCGAACGTAGAGTCAATAAAGGGGAACCAATCGACATTAATTGACACACTAGAGTCACATCGAGATAAAAGCATTC
AAGGAAAAATCAATCAATTACGTGATATAGACTTACGAATGATTGAGCAACAACTACAAAATGAATATATCAGTATCATC
AGTTTAAACGCTCCGAATTATCCGCCACATTTAAAACACATTTATGATCCTCCACCTATTCTTTTTTGTCGTGGACAACT
GCAACTTTTAACACATACTCAAACACTTGCCATTGTGGGTTCGCGCAAGCATACTCACTATACGAACAAAGTATTAAATA
ATATCATGCCACATTTCGCTTCAGCACATTTAACGATTGTATCAGGGCTTGCTAAAGGTGCAGATGCATGTGCACATCAA
TTGGCGATTCGACATGGATGTTCGACGATTGGTGTGTTAGGATTCGGGCATCATCATCACTATCCGAAAGAAACGAAGTC
CATACGGGACTATATGGATCGTGTCCATTTAACGATAAGTGAATATCCACCATTTGTATCACCAGCAGCTTTTCGTTTTC
CCGAAAGGAATCGTCTTATTAGTGGGCTTTCCAAGGGTGTATTTATCACTGAAGCAAAAGAACGGAGTGGTGCACTGATT
ACGGTCGATCACGCACTTGAACAAAATCGCAACGTATATGTATTGCCGGGTGATATGTATAATCCATTTACAAAAGGGAA
TATGTTGAGAATTCAAGAAGGAGCAGAAGTCGTCTTGTCAGAAAATGATATTTTGAAGGATTATTGTCAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

49.648

97.931

0.486
  dprA Staphylococcus aureus N315

49.648

97.931

0.486