Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MUA74_RS00565 Genome accession   NZ_CP094720
Coordinates   133608..134960 (-) Length   450 a.a.
NCBI ID   WP_262609301.1    Uniprot ID   A0A9Q9K7V9
Organism   Staphylococcus sp. IVB6233     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 128608..139960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA74_RS00535 (MUA74_00535) - 128970..129308 (-) 339 WP_262609296.1 hypothetical protein -
  MUA74_RS00540 (MUA74_00540) - 129298..129789 (-) 492 WP_262609297.1 hypothetical protein -
  MUA74_RS00545 (MUA74_00545) - 130228..130731 (-) 504 WP_262609298.1 DUF1643 domain-containing protein -
  MUA74_RS00550 (MUA74_00550) - 130746..131057 (-) 312 WP_031912426.1 DUF960 family protein -
  MUA74_RS00555 (MUA74_00555) - 131153..131491 (-) 339 WP_262609299.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA74_RS00560 (MUA74_00560) ccrB 131960..133591 (-) 1632 WP_262609300.1 recombinase family protein Machinery gene
  MUA74_RS00565 (MUA74_00565) ccrA 133608..134960 (-) 1353 WP_262609301.1 recombinase family protein Machinery gene
  MUA74_RS00570 (MUA74_00570) - 135139..135429 (-) 291 WP_107618166.1 hypothetical protein -
  MUA74_RS00575 - 135520..135642 (-) 123 WP_262609302.1 hypothetical protein -
  MUA74_RS00580 (MUA74_00575) - 135773..137305 (-) 1533 WP_262609303.1 DUF927 domain-containing protein -
  MUA74_RS00585 (MUA74_00580) - 137307..137543 (-) 237 WP_217874058.1 DUF1413 domain-containing protein -
  MUA74_RS00590 (MUA74_00585) - 137746..138546 (-) 801 WP_262609304.1 hypothetical protein -
  MUA74_RS00595 (MUA74_00590) - 138719..139285 (-) 567 WP_262609305.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 52511.09 Da        Isoelectric Point: 9.8579

>NTDB_id=671187 MUA74_RS00565 WP_262609301.1 133608..134960(-) (ccrA) [Staphylococcus sp. IVB6233]
MKQAIGYLRQSTLKQQSLTAQKQTIETLAKKYNIQHITFYSDKQSGRTDNRTGYQQVIERIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYH
NGTFTINQDEAPTVKAIFHYYLQGYGYKKIAQYLETDNQNINRKPYQVRAIIMNPNYCGRVINQYGQYDNMFPPIISISN
YEQAQILRSEKHVKRTPSANQLKQKIKCPCCSSTLTNMTIRNKQHNTLRYYVCPRNMNESRFVCDFKGINAKDIETSVLT
TCRHFFQDQQVYSKINDAIQQHIQKQNTLETKRTYTQAQLINKLAKGTIDAEIFKTEIQNLHQQNTLTSINSKHIQSAFH
NVIQKCFTLNILYPYIDVIHITENKTLTGIYFKNEPLNIVNQTKQSSIVS

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=671187 MUA74_RS00565 WP_262609301.1 133608..134960(-) (ccrA) [Staphylococcus sp. IVB6233]
ATGAAACAAGCTATCGGTTACTTACGTCAAAGTACACTCAAACAACAATCACTCACTGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCACCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACGGGTT
ACCAACAAGTTATCGAACGCATTCAACAAAGACAATGTGATGTATTATGTTGTTATCGCTTGAATCGACTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTCTGTCAAAAATATCATGTTCATATTCTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAGCTCAATATATTCATAAGCCTCGCAGAATTAGAGTCTGATAATATTGGTGAAC
AAGTCAAGAATGGCCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACAACACATGCACCATTTGGCTATACCTATCAC
AATGGTACATTCACAATTAATCAAGATGAAGCTCCAACGGTGAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAAAAAATTGCGCAATACCTAGAAACAGATAATCAAAACATCAATCGTAAACCCTACCAAGTACGCGCTATTATCATGA
ATCCTAATTACTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTTCCACCTATTATTTCTATCAGTAAC
TATGAACAAGCGCAGATTTTACGTTCTGAAAAACATGTCAAACGAACACCTTCAGCTAATCAACTGAAACAAAAAATCAA
ATGTCCATGTTGTAGCTCAACACTCACCAATATGACAATCAGAAACAAACAACATAATACATTACGTTATTATGTCTGTC
CTCGAAATATGAATGAATCTCGTTTTGTCTGTGACTTTAAAGGGATTAACGCTAAAGATATAGAAACAAGTGTTTTAACA
ACATGTCGACACTTCTTTCAAGACCAACAGGTCTATTCCAAAATAAATGATGCCATTCAACAACACATCCAAAAACAAAA
CACACTGGAAACTAAGCGCACGTACACTCAAGCACAACTCATCAATAAGTTAGCCAAAGGAACGATAGATGCAGAAATAT
TCAAAACAGAAATACAAAACTTACACCAACAAAATACACTGACATCTATCAATTCTAAGCACATCCAAAGCGCATTTCAT
AATGTAATACAAAAATGTTTCACGTTAAACATCTTGTATCCTTATATTGATGTCATTCATATTACTGAAAACAAGACACT
TACAGGTATTTATTTCAAAAATGAACCACTGAATATCGTTAATCAAACTAAACAATCATCGATTGTATCATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

76

100

0.76
  ccrA Staphylococcus aureus N315

72.222

100

0.722