Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA74_RS00560 Genome accession   NZ_CP094720
Coordinates   131960..133591 (-) Length   543 a.a.
NCBI ID   WP_262609300.1    Uniprot ID   A0A9Q9K4U7
Organism   Staphylococcus sp. IVB6233     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 126960..138591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA74_RS00525 (MUA74_00525) - 127136..128230 (-) 1095 WP_262609294.1 IS30 family transposase -
  MUA74_RS00530 (MUA74_00530) - 128285..128719 (-) 435 WP_262609295.1 hypothetical protein -
  MUA74_RS00535 (MUA74_00535) - 128970..129308 (-) 339 WP_262609296.1 hypothetical protein -
  MUA74_RS00540 (MUA74_00540) - 129298..129789 (-) 492 WP_262609297.1 hypothetical protein -
  MUA74_RS00545 (MUA74_00545) - 130228..130731 (-) 504 WP_262609298.1 DUF1643 domain-containing protein -
  MUA74_RS00550 (MUA74_00550) - 130746..131057 (-) 312 WP_031912426.1 DUF960 family protein -
  MUA74_RS00555 (MUA74_00555) - 131153..131491 (-) 339 WP_262609299.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA74_RS00560 (MUA74_00560) ccrB 131960..133591 (-) 1632 WP_262609300.1 recombinase family protein Machinery gene
  MUA74_RS00565 (MUA74_00565) ccrA 133608..134960 (-) 1353 WP_262609301.1 recombinase family protein Machinery gene
  MUA74_RS00570 (MUA74_00570) - 135139..135429 (-) 291 WP_107618166.1 hypothetical protein -
  MUA74_RS00575 - 135520..135642 (-) 123 WP_262609302.1 hypothetical protein -
  MUA74_RS00580 (MUA74_00575) - 135773..137305 (-) 1533 WP_262609303.1 DUF927 domain-containing protein -
  MUA74_RS00585 (MUA74_00580) - 137307..137543 (-) 237 WP_217874058.1 DUF1413 domain-containing protein -
  MUA74_RS00590 (MUA74_00585) - 137746..138546 (-) 801 WP_262609304.1 hypothetical protein -

Sequence

Protein


Download         Length: 543 a.a.        Molecular weight: 62374.23 Da        Isoelectric Point: 9.6343

>NTDB_id=671186 MUA74_RS00560 WP_262609300.1 131960..133591(-) (ccrB) [Staphylococcus sp. IVB6233]
MEKLKQKRVGIYVRVSTEMQSSEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPALQRMLQDAKNGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVSTSSGKLMLQVLASFAEFERNNIVDNIFTGQTIRAKEGYYQGN
IPYAYDKVPDSKHELMINQHEANVVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYVGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQTLWDKVQARKKQVSEKPQVHGKGTNLLTGLISCERCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQEHQIDTSALNHDIAYKQQQYD
EVQIKLDNLIKTLEDNPDLTSVLKNTIHQYEKQLNDITNQINQLKQQQSAPKTIYDANEIATILRHIFKNIETMDKAQLK
ALYLTVIDHIDIRKDEHHKKQFYVTLKLNHEIIKQLFHNTPLDEVQLSTSSLLLSQTLYLPIS

Nucleotide


Download         Length: 1632 bp        

>NTDB_id=671186 MUA74_RS00560 WP_262609300.1 131960..133591(-) (ccrB) [Staphylococcus sp. IVB6233]
ATGGAAAAACTTAAACAAAAGCGTGTGGGAATTTATGTACGCGTATCGACTGAGATGCAGAGCTCAGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTATACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGCCCTGCACTACAACGTATGTTACAAGACGCTAAAAATGGTCATATCGATTGTGTTATG
GTCTACAAAACAAATCGATTAGCACGTAATACATCTGACCTACTCAAAATCGTTGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTCTGTCTGAACGTATGGAAGTTAGCACGAGTAGTGGTAAGCTCATGCTCCAGGTGCTTGCGAGCTTCGCAG
AATTTGAACGCAATAATATTGTAGACAATATATTTACGGGCCAGACAATTAGAGCGAAAGAAGGGTATTATCAGGGTAAT
ATTCCCTATGCGTATGATAAAGTACCTGACAGTAAACACGAACTTATGATTAATCAACATGAAGCCAATGTTGTAAAGTA
TATCTTCGAATCATATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATGCGCTCAACCATAAAGGTTATGTCACAAAGA
AAGGGAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCTAATCCCTTCTATGTCGGTAAAATACAATTCGCGAAA
TACAAAGATTGGAATGATAAACGACGTAAAGGGTTAAATGATAAACCCGTAATTGCCGAAGGCAAACACACCCCTATTAT
TAGCCAAACATTATGGGATAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTACATGGTAAAGGAACCA
ACCTTTTGACTGGATTAATTTCGTGTGAAAGATGTGGAGCGGCATACGCAGCATCGAATACAACGAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCATGTAGTAACTTTCGTAATAAAGGGTCAAAAGTATGTTCTGCGAATAGTGT
CAGAGCCGATGTAATTGAAAAATATGTTATGGATCAAATACTCGAAATCGTTAAAAGTGACAAAGTTATCAAACAAGTCG
TTGAGCGTGTCAATCAAGAACATCAAATTGATACGTCTGCACTCAATCATGATATCGCATATAAGCAACAACAATATGAT
GAGGTCCAAATCAAATTAGATAACTTGATCAAAACACTTGAAGATAATCCAGACTTAACATCTGTGCTTAAAAATACGAT
TCATCAGTATGAAAAACAACTCAATGACATCACAAATCAAATCAATCAACTTAAGCAACAACAAAGTGCTCCCAAAACAA
TATATGACGCTAATGAGATTGCGACTATATTACGTCATATATTCAAAAATATCGAAACCATGGATAAAGCACAACTCAAA
GCACTATACCTTACGGTCATAGACCACATTGATATTCGTAAAGACGAACATCATAAAAAACAGTTCTACGTCACATTAAA
ACTCAATCATGAAATCATTAAACAACTCTTCCATAATACCCCTCTCGACGAAGTGCAACTCAGCACTTCGTCTTTATTAT
TATCTCAAACACTCTATTTGCCTATCTCATAA

Domains

Predicted by InterProScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Resolvase, N terminal domain (Resolvase)

(11-155)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

81.365

99.816

0.812