Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OIE61_RS28420 Genome accession   NZ_CP109122
Coordinates   6299951..6300964 (+) Length   337 a.a.
NCBI ID   WP_267001490.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01762     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6294951..6305964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE61_RS28400 (OIE61_28430) - 6295230..6296906 (+) 1677 WP_326627019.1 ABC transporter substrate-binding protein -
  OIE61_RS28405 (OIE61_28435) - 6296928..6297974 (+) 1047 WP_326627017.1 ABC transporter ATP-binding protein -
  OIE61_RS28410 (OIE61_28440) - 6297971..6298951 (+) 981 WP_326627015.1 ABC transporter permease -
  OIE61_RS28415 (OIE61_28445) - 6298956..6299954 (+) 999 WP_326627013.1 ABC transporter permease -
  OIE61_RS28420 (OIE61_28450) amiE 6299951..6300964 (+) 1014 WP_267001490.1 ABC transporter ATP-binding protein Regulator
  OIE61_RS28425 (OIE61_28455) - 6300993..6302411 (+) 1419 WP_326817813.1 GH1 family beta-glucosidase -
  OIE61_RS28430 (OIE61_28460) - 6302565..6305672 (+) 3108 WP_326817814.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36676.02 Da        Isoelectric Point: 6.5537

>NTDB_id=671185 OIE61_RS28420 WP_267001490.1 6299951..6300964(+) (amiE) [Streptomyces sp. NBC_01762]
MSEPVLTISGLNVDYGTGDAAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHQRDGERL
DLLTLTAPELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLKAHRPEMNRAERTARAKELLSLVGISADRLSAYPHQL
SGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRQLVRLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIVE
EAGASDIYQDPRHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPAGCAFHPRCGKALEPCATQVPVLDRPEGDGSRT
VACWLHQPAPATAAPRS

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=671185 OIE61_RS28420 WP_267001490.1 6299951..6300964(+) (amiE) [Streptomyces sp. NBC_01762]
ATGAGCGAGCCCGTCCTCACCATCAGTGGCCTGAACGTGGACTACGGAACCGGGGACGCCGCCGTGCACGCGCTGCGCGA
CATCGACCTCACCCTGCACCGAGGCGAAGTCCTCGGCCTGGCAGGCGAGTCGGGCTCCGGCAAGTCGACCCTGGCGTACG
CCGTCACCCGCCTCCTCTCCCCACCGGGAGTGATCACCGGCGGCGAGGTCCACTACCACCAGCGCGACGGGGAAAGGCTC
GACCTGCTGACGCTGACCGCCCCCGAGCTCCGCGCCTTCCGCTGGCAGGAGTTGTCGATCGTCTTCCAGGGAGCGATGAA
CTCGCTCAACCCGGTGCACACGGTCCACAGCCAGCTCACCGACGTACTCAAGGCGCACCGCCCCGAGATGAACCGGGCCG
AGCGCACCGCACGCGCGAAGGAACTGCTGTCGCTGGTCGGCATCTCCGCGGACCGGCTCTCCGCCTACCCGCACCAGCTA
TCCGGCGGCATGCGCCAGCGCGTGATGATCGCGATGGCACTTGCGCTGGAGCCCGAGATCGTCATCATGGACGAGCCCAC
GACGGCCCTGGACGTCGTCATGCAGCGCCAGATCCTGCGCCAGCTGGTCAGGCTCCGCGAGGAGCTGGGCTTCTCGGTCG
TCTTCATCACGCACGACATCTCGCTGCTGATCGAGTTCTCGGACCGGATCGCGATCATGTACGGCGGCCGGATCGTCGAG
GAGGCCGGTGCCTCCGACATCTACCAGGACCCCCGCCACCCCTACAGCGACGGCCTGCTGCACTCCTTCCCGGCTCTGCA
CGGTCCCCGCCGCGAACTCACCGGCATTCCCGGCTCGCCTCCGCATCTGTCCGCGATGCCGGCCGGATGCGCCTTCCACC
CCCGCTGCGGCAAGGCACTCGAACCGTGCGCCACCCAGGTGCCGGTACTCGACCGGCCGGAAGGGGACGGCTCCCGCACG
GTGGCCTGCTGGCTGCATCAGCCGGCCCCGGCGACCGCCGCCCCCCGCTCGTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-303)

ABC transporter (ABC_tran)

(25-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.757

100

0.389
  amiE Streptococcus thermophilus LMD-9

38.757

100

0.389
  amiE Streptococcus salivarius strain HSISS4

38.462

100

0.386