Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA74_RS00330 Genome accession   NZ_CP094720
Coordinates   76242..77870 (-) Length   542 a.a.
NCBI ID   WP_262609283.1    Uniprot ID   A0A9Q9NB31
Organism   Staphylococcus sp. IVB6233     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 71242..82870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA74_RS00305 (MUA74_00305) - 73044..74174 (+) 1131 WP_197945456.1 GIY-YIG nuclease family protein -
  MUA74_RS00310 (MUA74_00310) - 74268..74489 (-) 222 WP_175528681.1 hypothetical protein -
  MUA74_RS00315 (MUA74_00315) - 74504..75013 (-) 510 WP_262609281.1 DUF1643 domain-containing protein -
  MUA74_RS00320 (MUA74_00320) - 75028..75339 (-) 312 WP_053017467.1 DUF960 domain-containing protein -
  MUA74_RS00325 (MUA74_00325) - 75426..75776 (-) 351 WP_262609282.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA74_RS00330 (MUA74_00330) ccrB 76242..77870 (-) 1629 WP_262609283.1 recombinase family protein Machinery gene
  MUA74_RS00335 (MUA74_00335) ccrA 77891..79240 (-) 1350 WP_262609284.1 recombinase family protein Machinery gene
  MUA74_RS00340 (MUA74_00340) - 79432..79707 (-) 276 WP_046099761.1 hypothetical protein -
  MUA74_RS00345 (MUA74_00345) - 79776..81563 (-) 1788 WP_262609285.1 DUF927 domain-containing protein -
  MUA74_RS00350 (MUA74_00350) - 81563..81856 (-) 294 WP_262609286.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62590.63 Da        Isoelectric Point: 9.8140

>NTDB_id=671184 MUA74_RS00330 WP_262609283.1 76242..77870(-) (ccrB) [Staphylococcus sp. IVB6233]
MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPALQRMLHDANKGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVTTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANTLNHKGYVTKKGKPFSISSITYILSNPFYMGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHAPIISQALWDKVQARKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQIDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=671184 MUA74_RS00330 WP_262609283.1 76242..77870(-) (ccrB) [Staphylococcus sp. IVB6233]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTCCGCGTATCAACAGAAATGCAAAGTGCAGAGGGTTATAGTAT
CGACGGTCAAATCAATCAAATCAAAGAATATTGTAACTTCCATCATTTCGAAGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGAAAGTCTATGAACCGCCCTGCACTTCAACGTATGTTACATGATGCGAATAAAGGTCATATTGATTGTGTTATG
GTGTATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAGCGTATGGAAGTCACGACTTCTTCTGGTAAACTCATGTTACAAATTCTAGCTTCGTTTTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGTCAAACCAGACGTGCCCAAGAAGGCTATTATCAAGGAAAT
TTACCGCTAGGCTATGACAAAATACCCGACAGTAAACACGAATTGATGATTAATCAACATGAAGCTAATATTGTAAAATA
TATTTTCGAATCTTATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATACACTCAATCATAAAGGCTATGTCACTAAAA
AAGGGAAGCCTTTCAGTATAAGTTCTATTACTTATATTCTATCCAATCCCTTCTATATGGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAACGTCGTAAAGGACTGAATGATAAACCGATCATAGCTGAGGGTAAGCACGCCCCTATTAT
TAGCCAAGCATTATGGGATAAAGTGCAAGCACGTAAAAAGCAAGTCAGTCAAAAACCCCAAGTTCACGGTAAAGGAACTA
ATCTATTAACAGGTATTGTTCATTGTCCCCAATGCGGCGCACCTATGGCCGCGAGTAATACTACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCGGCCAATAGTGT
TAGAGCCGATGTCATAGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGAAAATCAAATCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACGATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGACATTACAAACCAAATGAATCAACTCAAGCAACAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

87.085

100

0.871