Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MUA48_RS00405 Genome accession   NZ_CP094719
Coordinates   94232..95581 (-) Length   449 a.a.
NCBI ID   WP_262604222.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6238     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89232..100581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA48_RS00375 (MUA48_00370) - 89546..90748 (-) 1203 Protein_72 DNA/RNA helicase domain-containing protein -
  MUA48_RS00380 (MUA48_00375) - 90749..90946 (-) 198 Protein_73 DUF1643 domain-containing protein -
  MUA48_RS00385 (MUA48_00380) - 90959..91270 (-) 312 WP_031914242.1 DUF960 family protein -
  MUA48_RS00390 (MUA48_00385) - 91366..91704 (-) 339 WP_031914243.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA48_RS00395 (MUA48_00390) - 92260..92547 (+) 288 WP_262604220.1 hypothetical protein -
  MUA48_RS00400 (MUA48_00395) ccrB 92582..94210 (-) 1629 WP_262604221.1 recombinase family protein Machinery gene
  MUA48_RS00405 (MUA48_00400) ccrA 94232..95581 (-) 1350 WP_262604222.1 recombinase family protein Machinery gene
  MUA48_RS00410 (MUA48_00405) - 95760..97547 (-) 1788 WP_262604223.1 DUF927 domain-containing protein -
  MUA48_RS00415 (MUA48_00410) - 97672..99102 (-) 1431 WP_262604224.1 DUF6038 family protein -
  MUA48_RS00420 (MUA48_00415) - 99531..99908 (+) 378 WP_262604225.1 PD-(D/E)XK nuclease family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52271.86 Da        Isoelectric Point: 10.0722

>NTDB_id=671152 MUA48_RS00405 WP_262604222.1 94232..95581(-) (ccrA) [Staphylococcus sp. IVB6238]
MKQAIGYLRQSTTKQQSLGAQKQTIQTLAKKYNVQHITFYSDKQSGRTDNRTGYQQVIESIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQGYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIFSTNI
YEQAQEIRSQKHTKRTPSDNQLQKKIKCPYCGSTLTNMTIRKKHHTLRYYVCPKNMNASRFVCAFKGINAQVLETSVLAT
CQNFFQNQQLYSKINQTIQQRFKRQRDIEAKHTLTQEQLIDKLAKGMIDAETFRNQSQSVLQKRKTISSISDTQLQTSLQ
KVIQKSFTLNMLYPYIDEIHITKNKELSGIYIKNEPLNIVNQTIQSSTG

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=671152 MUA48_RS00405 WP_262604222.1 94232..95581(-) (ccrA) [Staphylococcus sp. IVB6238]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACTAAGCAACAATCCCTAGGAGCACAGAAACAAACTATCCAAAC
ACTCGCTAAAAAATACAATGTCCAACACATCACCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACTGGTT
ATCAACAAGTCATCGAAAGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTGCATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGTTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTTAAGAATGGCCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACGGTAAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAGCCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGATAACATGTTCCCATCTATTTTTTCGACCAATATA
TACGAACAAGCTCAAGAAATACGGTCACAAAAACATACAAAACGGACTCCTTCAGATAATCAACTTCAGAAGAAAATAAA
ATGTCCATATTGTGGATCAACCCTGACTAATATGACGATTAGAAAAAAGCACCATACCTTACGTTATTATGTCTGTCCTA
AAAACATGAATGCATCACGTTTTGTCTGTGCATTCAAAGGAATCAATGCGCAAGTATTAGAAACAAGTGTCTTAGCGACT
TGTCAGAACTTCTTTCAGAACCAACAGCTCTATTCAAAAATCAACCAAACAATTCAACAACGATTCAAAAGACAAAGGGA
CATAGAAGCTAAACATACACTCACGCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAAACATTCA
GGAATCAGTCTCAATCAGTGCTTCAAAAGCGCAAAACCATATCTTCAATAAGTGATACTCAGTTACAAACATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGTATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAATT
AAGCGGAATCTATATAAAAAATGAGCCACTAAACATCGTTAATCAAACGATACAATCATCAACTGGCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

81.208

99.555

0.808
  ccrA Staphylococcus aureus N315

73.274

100

0.733