Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA48_RS00400 Genome accession   NZ_CP094719
Coordinates   92582..94210 (-) Length   542 a.a.
NCBI ID   WP_262604221.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6238     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87582..99210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA48_RS00365 (MUA48_00360) - 87818..88855 (-) 1038 WP_262604218.1 S66 peptidase family protein -
  MUA48_RS00370 (MUA48_00365) - 89189..89479 (+) 291 WP_262604219.1 nucleotide pyrophosphohydrolase -
  MUA48_RS00375 (MUA48_00370) - 89546..90748 (-) 1203 Protein_72 DNA/RNA helicase domain-containing protein -
  MUA48_RS00380 (MUA48_00375) - 90749..90946 (-) 198 Protein_73 DUF1643 domain-containing protein -
  MUA48_RS00385 (MUA48_00380) - 90959..91270 (-) 312 WP_031914242.1 DUF960 family protein -
  MUA48_RS00390 (MUA48_00385) - 91366..91704 (-) 339 WP_031914243.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA48_RS00395 (MUA48_00390) - 92260..92547 (+) 288 WP_262604220.1 hypothetical protein -
  MUA48_RS00400 (MUA48_00395) ccrB 92582..94210 (-) 1629 WP_262604221.1 recombinase family protein Machinery gene
  MUA48_RS00405 (MUA48_00400) ccrA 94232..95581 (-) 1350 WP_262604222.1 recombinase family protein Machinery gene
  MUA48_RS00410 (MUA48_00405) - 95760..97547 (-) 1788 WP_262604223.1 DUF927 domain-containing protein -
  MUA48_RS00415 (MUA48_00410) - 97672..99102 (-) 1431 WP_262604224.1 DUF6038 family protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62587.55 Da        Isoelectric Point: 9.6456

>NTDB_id=671151 MUA48_RS00400 WP_262604221.1 92582..94210(-) (ccrB) [Staphylococcus sp. IVB6238]
MQQLKQKRVGIYVRVSTEIQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINKVLERVNQENKVDIGALNHDIAYKQQQFD
EIQAKLNNLVKTIEDNPDLTSVLKETIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKSHLK
ALYLTVIDRIDIRKDGNHKKQFFVTLKLNNEIIKQLFNNNSLDEVLLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=671151 MUA48_RS00400 WP_262604221.1 92582..94210(-) (ccrB) [Staphylococcus sp. IVB6238]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTGCTGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGACAAACCAGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
ATTCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGTAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGTCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATTGCTTATAAGCAACAACAATTTGAT
GAAATACAAGCTAAATTAAATAATTTGGTTAAAACTATTGAAGATAATCCAGACTTAACGTCCGTACTCAAAGAAACCAT
ACACCAATATGAAACGCAACTCAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCAATGGATAAATCACATCTTAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTTTGTCACACTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATAACTCGCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTTTACCTTACAATTTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

87.454

100

0.875