Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MUA88_RS07565 Genome accession   NZ_CP094718
Coordinates   1523861..1524490 (-) Length   209 a.a.
NCBI ID   WP_262605329.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6240     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1518861..1529490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA88_RS07535 (MUA88_07520) - 1519014..1520252 (-) 1239 WP_262605328.1 aminopeptidase -
  MUA88_RS07540 (MUA88_07525) - 1520267..1520473 (-) 207 WP_262605142.1 DUF1128 domain-containing protein -
  MUA88_RS07545 (MUA88_07530) - 1520706..1521167 (+) 462 WP_262603536.1 low molecular weight protein-tyrosine-phosphatase -
  MUA88_RS07550 (MUA88_07535) - 1521167..1521457 (+) 291 WP_262603537.1 YtxH domain-containing protein -
  MUA88_RS07555 (MUA88_07540) - 1521639..1522937 (+) 1299 WP_262603538.1 YihY/virulence factor BrkB family protein -
  MUA88_RS07560 (MUA88_07545) - 1523232..1523810 (+) 579 WP_262603539.1 carbonic anhydrase -
  MUA88_RS07565 (MUA88_07550) vraR 1523861..1524490 (-) 630 WP_262605329.1 response regulator transcription factor Regulator
  MUA88_RS07570 (MUA88_07555) vraS 1524480..1525523 (-) 1044 WP_262603541.1 sensor histidine kinase Regulator
  MUA88_RS07575 (MUA88_07560) liaF 1525520..1526224 (-) 705 WP_262603542.1 cell wall-active antibiotics response protein LiaF -
  MUA88_RS07580 (MUA88_07565) - 1526237..1526626 (-) 390 WP_262603543.1 hypothetical protein -
  MUA88_RS07585 (MUA88_07570) map 1526725..1527486 (-) 762 WP_262603544.1 type I methionyl aminopeptidase -
  MUA88_RS07590 (MUA88_07575) - 1527581..1528579 (+) 999 WP_262603545.1 aromatic acid exporter family protein -
  MUA88_RS07595 (MUA88_07580) - 1528649..1529374 (-) 726 WP_262603546.1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23333.99 Da        Isoelectric Point: 5.1605

>NTDB_id=671142 MUA88_RS07565 WP_262605329.1 1523861..1524490(-) (vraR) [Staphylococcus sp. IVB6240]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGGSGREAIEKAHELKPDVILMDLVMTDMDGVKATAQIKKDLPAIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIASAIRKTSQGESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=671142 MUA88_RS07565 WP_262605329.1 1523861..1524490(-) (vraR) [Staphylococcus sp. IVB6240]
ATGACGATTAAAGTTTTGTTTGTAGATGATCATGAAATGGTTCGTATTGGTATTTCTAGTTATTTATCGACTCAGCCAGA
CATTGAAGTGGTCGGTGAGGGCGGTTCAGGTAGAGAAGCCATTGAAAAAGCACATGAATTAAAGCCTGATGTTATCTTGA
TGGACCTTGTGATGACAGATATGGATGGTGTGAAAGCGACAGCACAAATAAAAAAAGACCTACCAGCAATTAAAGTCGTA
ATGTTAACGAGCTACATAGAGGATAAAGAAGTCTATCGTGCCTTAGATGCGGGTGTGGATAGTTATATTCTTAAAACGAC
AAGTGCGAGTGATATTGCGTCTGCGATACGTAAGACAAGCCAAGGAGAGTCAGTATTTGAAGCGGAAGTCTTGGTTAAAA
TGCGTAACCGTATGAAGCAGCGTGCAGAATTATATGAGATGTTAACAGAAAGAGAGATGGAGATTCTTTTACTGATTGCA
AAAGGATACTCCAATCAAGAAATTGCGAGTGCCTCACATATTACGATTAAAACCGTTAAAACTCATGTGAGTAATATTTT
AAGTAAGTTGGAAGTACAAGACCGTACACAAGCGGTCATTTATGCTTTCCAACATGGTTTGATTGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.378