Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA88_RS04575 Genome accession   NZ_CP094718
Coordinates   921295..922167 (+) Length   290 a.a.
NCBI ID   WP_262604934.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6240     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 916295..927167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA88_RS04545 (MUA88_04535) - 916491..917276 (+) 786 WP_262604928.1 ribonuclease HII -
  MUA88_RS04550 (MUA88_04540) - 917424..917807 (+) 384 WP_262605872.1 hypothetical protein -
  MUA88_RS04555 (MUA88_04545) - 917843..918454 (+) 612 WP_262605873.1 hypothetical protein -
  MUA88_RS04560 (MUA88_04550) - 918540..918809 (+) 270 WP_262604931.1 hypothetical protein -
  MUA88_RS04565 (MUA88_04555) sucC 919066..920232 (+) 1167 WP_262604932.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA88_RS04570 (MUA88_04560) sucD 920254..921162 (+) 909 WP_262604933.1 succinate--CoA ligase subunit alpha -
  MUA88_RS04575 (MUA88_04565) dprA 921295..922167 (+) 873 WP_262604934.1 DNA-processing protein DprA Machinery gene
  MUA88_RS04580 (MUA88_04570) topA 922270..924339 (+) 2070 WP_262604935.1 type I DNA topoisomerase -
  MUA88_RS04585 (MUA88_04575) trmFO 924360..925667 (+) 1308 WP_262605874.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA88_RS04590 (MUA88_04580) xerC 925991..926881 (+) 891 WP_262605875.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33150.52 Da        Isoelectric Point: 9.3223

>NTDB_id=671128 MUA88_RS04575 WP_262604934.1 921295..922167(+) (dprA) [Staphylococcus sp. IVB6240]
MTEPLSNKQLLLLLIYSGFTTRQIYRLFPDFEKLVGKKHILIERLEACRDRHIQAKVNTLKTIDIHVIEQQLITQNIHAV
SIDDSQYPHLLKYIYDPPPILFCRGKCQLLKHSNTLAIVGSRVHTQYTNKVLSDFMPHFAKAKLTIVSGLAKGADALAHE
IAIKNGCATIGVLGFGHLHHYPRDTRYLRDEMEKYHITISEYPPFVPPAKFRFPERNRIISGLSKGVFITEAKERSGALI
TVDQALQQNRNVYVLPGDIYNPYTKGNLLRIQEGAEIILSEKDIMKDYCQ

Nucleotide


Download         Length: 873 bp        

>NTDB_id=671128 MUA88_RS04575 WP_262604934.1 921295..922167(+) (dprA) [Staphylococcus sp. IVB6240]
ATGACAGAACCGTTATCAAATAAACAGCTACTTTTACTCCTCATTTATAGTGGTTTTACAACCCGCCAAATTTATAGATT
ATTCCCAGATTTTGAAAAACTTGTAGGTAAGAAACATATATTAATAGAAAGGCTTGAGGCATGTCGAGACAGACATATCC
AAGCTAAAGTAAATACGCTTAAAACTATAGATATCCATGTGATTGAACAACAATTGATTACTCAAAATATTCATGCTGTC
AGTATTGATGACTCCCAATATCCTCATTTATTAAAGTACATTTATGATCCACCACCTATTCTTTTCTGCAGAGGTAAATG
CCAACTTTTAAAACATTCCAATACACTTGCAATTGTAGGATCACGAGTACATACACAATATACGAACAAAGTATTAAGTG
ATTTTATGCCACATTTTGCAAAAGCGAAATTGACAATTGTTTCCGGTCTAGCAAAAGGTGCGGATGCACTTGCTCATGAA
ATTGCGATTAAAAATGGCTGTGCAACAATCGGTGTATTAGGCTTTGGACATTTACATCATTATCCAAGAGATACTAGATA
CTTACGTGATGAGATGGAGAAATATCATATAACAATCAGTGAATATCCGCCATTCGTTCCACCGGCAAAATTTCGTTTTC
CAGAACGAAATAGAATCATTAGTGGTCTTTCAAAAGGTGTTTTCATTACAGAGGCGAAAGAACGAAGTGGTGCACTAATT
ACAGTGGATCAAGCACTTCAACAAAATCGCAATGTGTATGTTTTACCGGGGGATATATATAATCCTTATACAAAAGGCAA
TTTGCTTAGAATTCAAGAAGGTGCTGAAATTATATTATCAGAAAAAGATATTATGAAAGATTATTGTCAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

48.951

98.621

0.483
  dprA Staphylococcus aureus N315

48.601

98.621

0.479