Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MUA26_RS00320 Genome accession   NZ_CP094717
Coordinates   75616..76965 (-) Length   449 a.a.
NCBI ID   WP_262614259.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6246     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 70616..81965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA26_RS00290 (MUA26_00290) - 70984..71274 (+) 291 WP_262614256.1 nucleotide pyrophosphohydrolase -
  MUA26_RS00295 (MUA26_00295) - 71341..72537 (-) 1197 WP_262614663.1 DUF2075 domain-containing protein -
  MUA26_RS00300 (MUA26_00300) - 72544..72736 (-) 193 Protein_57 DUF1643 domain-containing protein -
  MUA26_RS00305 (MUA26_00305) - 72749..73060 (-) 312 WP_031914242.1 DUF960 family protein -
  MUA26_RS00310 (MUA26_00310) - 73156..73494 (-) 339 WP_262614257.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA26_RS00315 (MUA26_00315) ccrB 73967..75595 (-) 1629 WP_262614258.1 recombinase family protein Machinery gene
  MUA26_RS00320 (MUA26_00320) ccrA 75616..76965 (-) 1350 WP_262614259.1 recombinase family protein Machinery gene
  MUA26_RS00325 (MUA26_00325) - 77144..78931 (-) 1788 WP_262614260.1 DUF927 domain-containing protein -
  MUA26_RS00330 (MUA26_00330) - 78931..79221 (-) 291 WP_107377044.1 hypothetical protein -
  MUA26_RS00335 (MUA26_00335) - 79363..80433 (+) 1071 WP_262614261.1 hypothetical protein -
  MUA26_RS00340 (MUA26_00340) - 80451..81044 (+) 594 WP_262614262.1 hypothetical protein -
  MUA26_RS00345 (MUA26_00345) - 81086..81760 (-) 675 WP_262614263.1 IS6 family transposase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52232.02 Da        Isoelectric Point: 9.9684

>NTDB_id=671088 MUA26_RS00320 WP_262614259.1 75616..76965(-) (ccrA) [Staphylococcus sp. IVB6246]
MKQAIGYLRQSTTKQQSLTAQKQTIETLAKKYNIQHIIFYSDKQSGRTDNRTGYQQVIESIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKTIFHYYLQGYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSISI
YEQAQAIRVNKQVQRTPSANLLKQKIKCPCCGSTLTNMTIRKKNHTLRYYVCPQNLNASRFVCEFKGINAQELETSVLTT
CQDFFQNQQLYSKINHTIQQRLKRQRMHDTSNTLTQEKLIENLAQGKIDVETFREQSQSINLQNKPIQAISDIRIKASLQ
KVIQKSFTLNMLHPYIDEIHITKSKTLMGIYFKNEPLNIVNQKTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=671088 MUA26_RS00320 WP_262614259.1 75616..76965(-) (ccrA) [Staphylococcus sp. IVB6246]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACGGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCATCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACTGGTT
ATCAACAAGTCATCGAAAGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTGCATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAGAATGGTCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACGGTTAAGACAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAGCCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGATCAGTATA
TACGAACAAGCTCAAGCAATACGGGTAAATAAACAAGTTCAGCGCACGCCTTCTGCTAATTTACTCAAACAAAAAATCAA
ATGTCCGTGTTGTGGCTCAACACTCACAAATATGACCATTAGAAAAAAGAACCATACATTACGTTATTACGTCTGTCCTC
AAAATTTGAATGCATCTCGTTTTGTCTGTGAATTCAAGGGTATCAACGCACAAGAATTAGAAACAAGTGTCTTAACGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGGAT
GCATGATACTAGTAACACATTAACTCAGGAAAAGCTTATTGAAAATTTAGCACAAGGAAAAATTGATGTAGAAACATTCA
GAGAACAGTCCCAATCAATTAATCTACAGAATAAACCTATACAAGCAATAAGTGATATTCGTATAAAAGCATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGCATCCCTATATTGATGAAATTCATATCACAAAAAGTAAAACACT
AATGGGTATCTATTTCAAAAATGAACCTTTAAACATCGTCAATCAAAAAACACAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-248)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

80.401

100

0.804
  ccrA Staphylococcus aureus N315

72.606

100

0.726