Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA26_RS00315 Genome accession   NZ_CP094717
Coordinates   73967..75595 (-) Length   542 a.a.
NCBI ID   WP_262614258.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6246     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68967..80595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA26_RS00280 (MUA26_00280) - 69209..69556 (+) 348 WP_107367543.1 PTS glucitol/sorbitol transporter subunit IIA -
  MUA26_RS00285 (MUA26_00285) - 69613..70650 (-) 1038 WP_262614255.1 S66 peptidase family protein -
  MUA26_RS00290 (MUA26_00290) - 70984..71274 (+) 291 WP_262614256.1 nucleotide pyrophosphohydrolase -
  MUA26_RS00295 (MUA26_00295) - 71341..72537 (-) 1197 WP_262614663.1 DUF2075 domain-containing protein -
  MUA26_RS00300 (MUA26_00300) - 72544..72736 (-) 193 Protein_57 DUF1643 domain-containing protein -
  MUA26_RS00305 (MUA26_00305) - 72749..73060 (-) 312 WP_031914242.1 DUF960 family protein -
  MUA26_RS00310 (MUA26_00310) - 73156..73494 (-) 339 WP_262614257.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA26_RS00315 (MUA26_00315) ccrB 73967..75595 (-) 1629 WP_262614258.1 recombinase family protein Machinery gene
  MUA26_RS00320 (MUA26_00320) ccrA 75616..76965 (-) 1350 WP_262614259.1 recombinase family protein Machinery gene
  MUA26_RS00325 (MUA26_00325) - 77144..78931 (-) 1788 WP_262614260.1 DUF927 domain-containing protein -
  MUA26_RS00330 (MUA26_00330) - 78931..79221 (-) 291 WP_107377044.1 hypothetical protein -
  MUA26_RS00335 (MUA26_00335) - 79363..80433 (+) 1071 WP_262614261.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62636.66 Da        Isoelectric Point: 9.7287

>NTDB_id=671087 MUA26_RS00315 WP_262614258.1 73967..75595(-) (ccrB) [Staphylococcus sp. IVB6246]
MQQLKQKRVAIYVRVSTEIQSTEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPALQRMLEDAKNGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINKVLERVNQENKVDIGALNHDIAYKQQQFD
EIQAKLNNLVKTIEDNPDLTSVLKETIHQYETQLNDITNQMNQLKQQQNQEKPFYDTKQIALLLQRIFQNIESMDKSHLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTQLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=671087 MUA26_RS00315 WP_262614258.1 73967..75595(-) (ccrB) [Staphylococcus sp. IVB6246]
ATGCAACAACTCAAACAAAAACGTGTCGCTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTGTACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGCCCTGCACTACAACGTATGTTAGAAGACGCTAAAAATGGTCACATCGATTGTGTCATG
GTCTACAAAACAAATCGATTAGCACGTAATACATCAGACTTGCTCAAAATTGTCGAGGATTTGCATAAACAGAACGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAACACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGCTTCTCTG
AATTCGAACGCAATAACATTGTCGAGAATGTATTCATGGGACAAACCAGACGTGCACAAGAAGGCTATTATCAAGGGAAT
TTGCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGTAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGTCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATTGCTTATAAGCAACAACAATTTGAT
GAAATACAAGCTAAATTAAATAATTTGGTTAAAACTATTGAAGATAATCCAGACTTAACGTCCGTACTCAAAGAAACCAT
ACACCAATATGAAACGCAACTCAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
TTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACATCTTAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACTCAGCTCGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(9-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.347

100

0.863