Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R30_RS05365 Genome accession   NZ_AP022245
Coordinates   1104226..1104963 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WP8-S18-CRE-02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1099226..1109963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R30_RS05335 (WP8S18C02_10520) yfiL 1099384..1099749 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  H7R30_RS05340 (WP8S18C02_10530) aroF 1099959..1101029 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  H7R30_RS05345 (WP8S18C02_10540) tyrA 1101040..1102161 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R30_RS05350 (WP8S18C02_10550) pheA 1102204..1103364 (-) 1161 WP_063073658.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R30_RS05355 pheL 1103463..1103510 (-) 48 WP_010723158.1 phe operon leader peptide -
  H7R30_RS05360 (WP8S18C02_10560) raiA 1103614..1103955 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7R30_RS05365 (WP8S18C02_10570) comL 1104226..1104963 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7R30_RS05370 (WP8S18C02_10580) rluD 1105098..1106078 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R30_RS05375 (WP8S18C02_10590) yfiH 1106075..1106806 (+) 732 WP_001752929.1 purine nucleoside phosphorylase YfiH -
  H7R30_RS05380 (WP8S18C02_10600) clpC 1106936..1109509 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=67095 H7R30_RS05365 WP_000197686.1 1104226..1104963(-) (comL) [Escherichia coli strain WP8-S18-CRE-02]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=67095 H7R30_RS05365 WP_000197686.1 1104226..1104963(-) (comL) [Escherichia coli strain WP8-S18-CRE-02]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment