Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OIE49_RS20115 Genome accession   NZ_CP109090
Coordinates   4428998..4430407 (-) Length   469 a.a.
NCBI ID   WP_326803509.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01788     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4423998..4435407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE49_RS20090 (OIE49_20095) - 4424086..4424751 (-) 666 WP_326803506.1 hypothetical protein -
  OIE49_RS20095 (OIE49_20100) - 4424739..4425278 (-) 540 WP_100568556.1 SigE family RNA polymerase sigma factor -
  OIE49_RS20100 (OIE49_20105) - 4425649..4426635 (-) 987 WP_326803507.1 A/G-specific adenine glycosylase -
  OIE49_RS20105 (OIE49_20110) - 4426839..4427711 (+) 873 WP_326803508.1 hypothetical protein -
  OIE49_RS20110 (OIE49_20115) disA 4427791..4428915 (-) 1125 WP_100568559.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OIE49_RS20115 (OIE49_20120) radA/sms 4428998..4430407 (-) 1410 WP_326803509.1 DNA repair protein RadA Machinery gene
  OIE49_RS20120 (OIE49_20125) - 4430570..4432390 (+) 1821 WP_326803510.1 hypothetical protein -
  OIE49_RS20125 (OIE49_20130) - 4432853..4433629 (-) 777 WP_326806284.1 hypothetical protein -
  OIE49_RS20130 (OIE49_20135) - 4433805..4434731 (+) 927 WP_100568562.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49729.77 Da        Isoelectric Point: 8.0106

>NTDB_id=670779 OIE49_RS20115 WP_326803509.1 4428998..4430407(-) (radA/sms) [Streptomyces sp. NBC_01788]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEF
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPSGMKVLEVADIGDALRVLPRSRRRDAPREQEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=670779 OIE49_RS20115 WP_326803509.1 4428998..4430407(-) (radA/sms) [Streptomyces sp. NBC_01788]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGACCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACCGTCGAGGAGTACGGCACGCCCGCGGTCCGTACGACGACGCCGGGCC
GGGTCACCACCTCAGCCGTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAATTC
GACCGGGTCCTGGGCGGCGGGCTGGTCCCCGGTGCCGTCGTCCTCCTCGCCGGTGAACCCGGCGTCGGCAAGTCCACGCT
GCTCCTCGACGTGGCTGCCAAGTCCGCCAGCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCCGCGAGCCAGG
TCCGCCTGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTGGCCGCCGAGACGGATCTGTCCGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCCTCCCTCCTCATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGGCGC
ACCCGGCGGCATGGCACAGGTGCGCGAGGTCGCGGGCGCCCTGATCCGCGCCTCCAAGGACCGCGGCATGTCCACGCTCC
TGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCCAGCGGCCTGTTCCTGACCCGCCGGGCGGAGCCCGTCCCCG
GCACCTGCCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCGGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCGCGCCGTACGACGTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTGCTGGAGCAGCGGGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CGGTCGCCCTCGCGCTGGCGTCGGCGGCGAGCGACACCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTG
GCGGGCGAGGTCAGACGCGTCACCGGCGTGCAGCGCCGGCTCGCCGAGGCCCACCGCCTGGGCTTCACGCACGCCCTCGT
ACCGGGCGACCCGGGCAAGGTCCCGTCGGGAATGAAGGTCCTGGAAGTGGCCGACATAGGGGACGCGCTGCGGGTCCTGC
CCCGCTCGCGTCGCCGGGACGCCCCACGGGAGCAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus pneumoniae D39

43.43

95.736

0.416
  radA Streptococcus pneumoniae R6

43.43

95.736

0.416
  radA Streptococcus pneumoniae Rx1

43.43

95.736

0.416
  radA Streptococcus mitis SK321

43.43

95.736

0.416
  radA Streptococcus mitis NCTC 12261

43.43

95.736

0.416
  radA Streptococcus pneumoniae TIGR4

43.43

95.736

0.416