Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OIE54_RS18425 Genome accession   NZ_CP109081
Coordinates   4112550..4114004 (+) Length   484 a.a.
NCBI ID   WP_326651706.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4107550..4119004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE54_RS18405 (OIE54_18385) - 4107794..4108621 (-) 828 WP_326651711.1 sugar phosphate isomerase/epimerase -
  OIE54_RS18410 (OIE54_18390) - 4108645..4109598 (-) 954 WP_406731252.1 Ppx/GppA family phosphatase -
  OIE54_RS18415 (OIE54_18395) - 4109639..4110445 (+) 807 WP_326651708.1 hypothetical protein -
  OIE54_RS18420 (OIE54_18400) - 4110495..4112153 (-) 1659 WP_406731253.1 BACON domain-containing protein -
  OIE54_RS18425 (OIE54_18405) radA/sms 4112550..4114004 (+) 1455 WP_326651706.1 DNA repair protein RadA Machinery gene
  OIE54_RS18430 (OIE54_18410) disA 4114049..4115173 (+) 1125 WP_326651705.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OIE54_RS18435 (OIE54_18415) - 4115197..4115988 (-) 792 WP_326651704.1 hypothetical protein -
  OIE54_RS18440 (OIE54_18420) - 4116374..4117288 (+) 915 WP_406731254.1 A/G-specific adenine glycosylase -
  OIE54_RS18445 (OIE54_18425) - 4117484..4118050 (+) 567 WP_326651702.1 SigE family RNA polymerase sigma factor -
  OIE54_RS18450 (OIE54_18430) - 4118038..4118709 (+) 672 WP_326651701.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 51095.30 Da        Isoelectric Point: 8.0178

>NTDB_id=670689 OIE54_RS18425 WP_326651706.1 4112550..4114004(+) (radA/sms) [Streptomyces sp. NBC_01794]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAAVPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIHALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPTGMKVIEVADMGEALRVLPRGRQRPSDGASVTAPRKERAEATRDD
DPRR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=670689 OIE54_RS18425 WP_326651706.1 4112550..4114004(+) (radA/sms) [Streptomyces sp. NBC_01794]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACAGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCTGTCCGTACGACCGCGGCGGGCC
GCGTCTCCACCGCCGCCGTCCCCATCGGCCAGGTCGACGGCCGGCAGGCGACCGCCCGCTCCACCGGTGTGGACGAGCTC
GACCGCGTCCTCGGCGGCGGTCTGGTGCCCGGCGCCGTCGTGCTGCTCGCGGGCGAACCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTCGCCGCCAAGGCCGCGAGCGACGAGCACCGGACGCTGTACGTCACGGGCGAGGAGTCCGCGAGCCAGG
TCCGCCTGCGCGCCGACCGGATCCATGCCCTGCACGACCACCTCTATCTCGCCGCCGAGACCGATCTCTCCGCGGTCCTC
GGCCACTTGGACGCGGTCAAGCCGTCCCTGCTGATCCTCGACTCCGTACAGACCGTCGCATCGCCGGAGATCGACGGTGC
GCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACGCTGC
TGGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGACCGCGGCTGCTCGAGCATCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGCCTTCGTCTCGTACGGGGTGTCAAGAACCGCTACGGCACGACCGACGAAGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTGGCCGACCCCTCGGGCCTCTTCCTCACCCGCCGGGCCGAGGCGGTCCCCG
GCACCTGTCTCACGGTCACCCTGGAAGGCCGCCGCCCGCTCGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCTTCGCCCCGGCGCACCACCTCGGGTCTGGAGACCTCACGGGTGTCGATGATGCTCGCGGTCCTCGAGCAGCGCGGCCG
GATCACCGCGCTCGGCAAGCGCGACATCTACAGCGCGACCGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTGG
CGATCGCGCTCGCGCTCGCCTCGGCCGCCAGCGACACTCCGCTTCCCAAGAACCTCGTCGCGATCGGCGAAGTCGGCCTC
GCGGGGGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGACTCGCTGAAGCCCACCGGCTCGGCTTCACGCACGCACTCGT
ACCGTCCGATCCCGGCAAGGTCCCGACCGGTATGAAGGTCATAGAAGTGGCCGATATGGGGGAGGCGCTGAGGGTGCTCC
CGCGCGGGCGGCAGAGGCCTTCCGACGGGGCCTCCGTAACGGCCCCGCGCAAAGAGCGTGCGGAGGCCACCCGGGACGAC
GACCCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.371

93.595

0.415
  radA Streptococcus mitis SK321

43.077

94.008

0.405
  radA Streptococcus mitis NCTC 12261

43.077

94.008

0.405
  radA Streptococcus pneumoniae TIGR4

43.142

93.388

0.403
  radA Streptococcus pneumoniae R6

43.142

93.388

0.403
  radA Streptococcus pneumoniae Rx1

43.142

93.388

0.403
  radA Streptococcus pneumoniae D39

43.142

93.388

0.403