Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ISX51_RS06300 Genome accession   NZ_CP094659
Coordinates   1316863..1318251 (+) Length   462 a.a.
NCBI ID   WP_017111109.1    Uniprot ID   -
Organism   Vibrio lentus strain ED252     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311863..1323251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS06285 (ISX51_06280) - 1313182..1313622 (+) 441 WP_281053498.1 hypothetical protein -
  ISX51_RS06295 (ISX51_06290) uvrB 1314560..1316590 (+) 2031 WP_281053499.1 excinuclease ABC subunit UvrB -
  ISX51_RS06300 (ISX51_06295) luxO 1316863..1318251 (+) 1389 WP_017111109.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ISX51_RS06305 (ISX51_06300) luxU 1318275..1318619 (+) 345 WP_065103213.1 quorum-sensing phosphorelay protein LuxU -
  ISX51_RS06310 (ISX51_06305) - 1318742..1319629 (-) 888 WP_102339795.1 YvcK family protein -
  ISX51_RS06315 (ISX51_06310) moaA 1319965..1320954 (+) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  ISX51_RS06320 (ISX51_06315) moaB 1321313..1321825 (+) 513 WP_065111001.1 molybdenum cofactor biosynthesis protein B -
  ISX51_RS06325 (ISX51_06320) moaC 1321838..1322317 (+) 480 WP_099165352.1 cyclic pyranopterin monophosphate synthase MoaC -
  ISX51_RS06330 (ISX51_06325) moaD 1322314..1322559 (+) 246 WP_065103215.1 molybdopterin synthase sulfur carrier subunit -
  ISX51_RS06335 (ISX51_06330) moaE 1322562..1323035 (+) 474 WP_065103216.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51746.31 Da        Isoelectric Point: 6.4047

>NTDB_id=670485 ISX51_RS06300 WP_017111109.1 1316863..1318251(+) (luxO) [Vibrio lentus strain ED252]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=670485 ISX51_RS06300 WP_017111109.1 1316863..1318251(+) (luxO) [Vibrio lentus strain ED252]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCAGTAGCGGCTCTATATCG
CTCGTATCTTACACCGCTCGAGATTGATATCAACATTGTCGGCACAGGCCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTACCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCAGAAGTTCCTGTGATCTTTATGACGGCTCACGGCTCGATTGATACGGCCGTTGAAGCTATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTTCGTATTACGGTGAACAACGCGATCCGCAAAGCGACAAAACTCAAAA
ACAGTGCTGAACATCCCGGTAATCAAAACTATCAAGGCTTCATTGGTAGTAGCCAAACCATGCAGCAGGTCTACCGAACG
ATCGATTCTGCAGCATCGAGTAAAGCGAGTATTTTCATCACAGGTGAAAGTGGCACCGGTAAAGAGGTGTGTGCAGAAGC
TATTCATGCTGCGAGTAAGCGTGGTGATAAGCCTTTCATTGCGATTAACTGTGCCGCTATTCCTAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTTAAAGGTGCCTTTACTGGGGCGGCAACGGATCGACAAGGCGCGGCTGAACTCGCAGATGGT
GGAACCCTGTTCCTAGATGAGTTGTGCGAAATGGATCTTGAGTTGCAAACCAAGCTTCTGCGTTTCATTCAAACCGGTAC
TTTTCAAAAAGTCGGTTCTTCAAAAATGAAGAGCGTTGATGTGCGCTTTGTTTGTGCAACTAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCTTTGCACTTGCCGCCACTGCGTGAG
CGTGGGGAAGATGTTATTGAAATTGCGTACTCGCTGCTGGGCTATATGTCTGTAGAGGAAGGTAAGGCCTTTGTGCGTTT
TGCTCAGGAAGTTCTGGATCGCTTTAACCAATACGAGTGGCCAGGTAACGTTCGCCAGTTACAAAACGTATTACGAAATG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCGCCACCATTGAATCAACCGATCGAAAACAGTCTG
CGATTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
GCAGGCCATAAAAGCGTGTGATGGTAACATCCCTCGCGCGGCAGGCTTTTTGGATGTCAGTCCATCGACGATTTACCGTA
AATTGCAAACGTGGAATGCGAAACAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.393

96.97

0.372