Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ISX51_RS04105 Genome accession   NZ_CP094659
Coordinates   818174..818779 (-) Length   201 a.a.
NCBI ID   WP_017108721.1    Uniprot ID   -
Organism   Vibrio lentus strain ED252     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 813174..823779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS04095 (ISX51_04095) aceF 814370..816256 (+) 1887 WP_065110807.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  ISX51_RS04100 (ISX51_04100) lpdA 816499..817926 (+) 1428 WP_017106891.1 dihydrolipoyl dehydrogenase -
  ISX51_RS04105 (ISX51_04105) opaR 818174..818779 (-) 606 WP_017108721.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  ISX51_RS04110 (ISX51_04110) hpt 819115..819645 (+) 531 WP_010435974.1 hypoxanthine phosphoribosyltransferase -
  ISX51_RS04115 (ISX51_04115) can 819755..820414 (-) 660 WP_281053372.1 carbonate dehydratase -
  ISX51_RS04120 (ISX51_04120) - 820701..822332 (+) 1632 WP_029223245.1 SulP family inorganic anion transporter -
  ISX51_RS04125 (ISX51_04125) - 822653..823570 (+) 918 WP_065110808.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23240.45 Da        Isoelectric Point: 6.0739

>NTDB_id=670483 ISX51_RS04105 WP_017108721.1 818174..818779(-) (opaR) [Vibrio lentus strain ED252]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=670483 ISX51_RS04105 WP_017108721.1 818174..818779(-) (opaR) [Vibrio lentus strain ED252]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTGCAATTGATGGAGATCGCTCTTGA
AGTTTTCTCTCGTCGTGGCATTGGCCGTGGCGGTCATGCAGACATCGCAGACATTGCTCAAGTATCAGTTGCAACTGTAT
TTAACTACTTCCCAACCCGAGAAGACCTGGTTGATGAAGTACTTAATCACGTAGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGACTTAGATATTCACGCAAAAGAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTGTGGCCTCTGTTTGTAACCACTAACC
GCACTAACCAGATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGACCCTAAA
CATCTTGCGAACCTATTCCACGGCATTTGTTACTCGCTATTCATCCAAGCGAAGCGTGTAGATACGCAAGAAGAACTTTC
GACCTTAACGGATAGCTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.869

99.005

0.731
  hapR Vibrio cholerae strain A1552

73.869

99.005

0.731