NTDB

Overview

Name	tsaP	Type	Machinery gene
Locus tag	MMY79_RS18465	Genome accession	NZ_CP094657
Coordinates	3972634..3973788 (+)	Length	384 a.a.
NCBI ID	WP_252610819.1	Uniprot ID	-
Organism	Acinetobacter sp. XS-4
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3967634..3978788

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MMY79_RS18440 (MMY79_18435)	-	3967782..3968996 (+)	1215	WP_252610813.1	oxygenase MpaB family protein	-
MMY79_RS18445 (MMY79_18440)	-	3969065..3969271 (-)	207	WP_252610815.1	hypothetical protein	-
MMY79_RS18450 (MMY79_18445)	-	3969326..3971440 (-)	2115	WP_252610817.1	TonB-dependent copper receptor	-
MMY79_RS18455 (MMY79_18450)	-	3971512..3971937 (-)	426	WP_005309169.1	DUF2946 family protein	-
MMY79_RS18460 (MMY79_18455)	def	3971981..3972511 (-)	531	WP_004795267.1	peptide deformylase	-
MMY79_RS18465 (MMY79_18460)	tsaP	3972634..3973788 (+)	1155	WP_252610819.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
MMY79_RS18470 (MMY79_18465)	dprA	3973809..3974942 (+)	1134	WP_252610821.1	DNA-processing protein DprA	Machinery gene
MMY79_RS18475 (MMY79_18470)	-	3974994..3975563 (+)	570	WP_252610823.1	Sua5/YciO/YrdC/YwlC family protein	-
MMY79_RS18480 (MMY79_18475)	-	3975953..3976873 (-)	921	WP_252610824.1	DMT family transporter	-
MMY79_RS18485 (MMY79_18480)	-	3976985..3977638 (-)	654	WP_252610825.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

Download Length: 384 a.a. Molecular weight: 42403.35 Da Isoelectric Point: 7.1124

                                >NTDB_id=670448 MMY79_RS18465 WP_252610819.1 3972634..3973788(+) (tsaP) [Acinetobacter sp. XS-4]

MKKVFNGMVEFHALGIKKHLLAFALFTGVAMGTVAEVHAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLTKPWRWP

EIWANNQHVKNPHWIYPGDRLLLCSLAGRPLIGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNDNVPVIPLEHIKQWLE

HSTILPADAIEHTPYIVGTADQRVLAAKGQTIYARGQGLVNGQRYAVYREGEPYYFTDSKGKKHSLGIELQQVASGIAIS

SEKDITTLELTDSYDSEVRRGDRVMPEEDATLPTLFYPVDAKQVTDAGKIIRVMGSIGSAAKNSVVTLDRGAAQGIQVGQ

VFDITQKGETIRDPKTKEPIQLPGQQIGSLMVFGTFDQLSYAYVLESDLPIKVGSSIQPPRFDD

Nucleotide

Download Length: 1155 bp

                                >NTDB_id=670448 MMY79_RS18465 WP_252610819.1 3972634..3973788(+) (tsaP) [Acinetobacter sp. XS-4]

ATGAAAAAGGTTTTTAACGGCATGGTTGAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTCGCACTTTTTAC

AGGGGTTGCAATGGGTACAGTAGCAGAGGTTCATGCTGCTAGTCCGAACCATAATCCACCCTCTCTAAAAAGTAATGCAC

CACATGTCTACGTTGTAAAACGCGGAGATACCCTGTGGGATATTTCCGGTCATTTCCTAACTAAACCTTGGCGCTGGCCA

GAAATCTGGGCAAATAATCAACATGTCAAAAATCCACACTGGATTTATCCTGGTGACCGATTATTGTTATGCAGTTTAGC

TGGTCGACCATTAATAGGTAAGGATGAGGGAGATGGTTGTGTTGGCATTATTCGTCGCTACACAGGCCAAATGACAAACT

TGCAACCTCAAGTTCGCGTGGAATCTCTCAACGATAACGTACCTGTTATTCCGCTTGAACATATCAAACAGTGGTTGGAA

CACAGCACAATTTTACCAGCCGATGCAATTGAACATACTCCATATATCGTGGGAACTGCCGATCAACGTGTGCTTGCAGC

AAAAGGTCAAACTATTTATGCACGCGGACAAGGTTTAGTTAATGGTCAACGTTATGCAGTTTACCGTGAAGGTGAACCTT

ACTATTTCACAGACAGTAAAGGTAAAAAGCACAGTCTAGGTATTGAACTACAACAAGTTGCCTCAGGGATTGCCATCTCT

TCTGAAAAGGACATAACAACACTTGAGTTAACTGATAGCTACGATTCCGAAGTCCGTCGTGGCGATCGGGTTATGCCAGA

AGAAGATGCAACACTGCCTACTTTATTTTATCCAGTAGATGCCAAACAAGTTACAGATGCCGGAAAGATCATTCGTGTAA

TGGGTTCAATTGGTAGCGCTGCCAAAAATAGTGTGGTGACTTTGGACCGAGGTGCAGCACAAGGGATTCAAGTGGGGCAA

GTTTTTGATATTACCCAAAAAGGTGAAACCATTCGAGATCCAAAAACCAAAGAACCAATACAATTACCTGGACAACAGAT

TGGTAGTCTGATGGTTTTTGGAACCTTTGATCAGCTTAGCTATGCCTATGTATTAGAAAGTGACTTACCTATTAAAGTAG

GTTCAAGTATTCAGCCACCTCGTTTTGATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
tsaP	Acinetobacter baumannii D1279779	89.583	100	0.896

Detailed information NTG0670448