Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OG946_RS29735 Genome accession   NZ_CP109072
Coordinates   6736010..6737839 (-) Length   609 a.a.
NCBI ID   WP_326799041.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01808     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6731010..6742839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG946_RS29715 (OG946_29730) - 6732327..6733343 (+) 1017 WP_326799037.1 NAD(P)-dependent oxidoreductase -
  OG946_RS29720 (OG946_29735) - 6733340..6734098 (+) 759 WP_326799038.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  OG946_RS29725 (OG946_29740) - 6734095..6735042 (+) 948 WP_326799039.1 saccharopine dehydrogenase NADP-binding domain-containing protein -
  OG946_RS29730 (OG946_29745) - 6735039..6735980 (+) 942 WP_326799040.1 aryldialkylphosphatase -
  OG946_RS29735 (OG946_29750) recQ 6736010..6737839 (-) 1830 WP_326799041.1 DNA helicase RecQ Machinery gene
  OG946_RS29740 (OG946_29755) - 6737927..6738199 (-) 273 WP_240662519.1 hypothetical protein -
  OG946_RS29745 (OG946_29760) - 6738319..6739323 (-) 1005 WP_326799042.1 proline racemase family protein -
  OG946_RS29750 (OG946_29765) - 6739420..6740784 (-) 1365 WP_326799043.1 FAD-dependent oxidoreductase -
  OG946_RS29755 (OG946_29770) - 6740781..6741038 (-) 258 WP_326799044.1 (2Fe-2S)-binding protein -
  OG946_RS29760 (OG946_29775) - 6741157..6742353 (-) 1197 WP_326799045.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66550.65 Da        Isoelectric Point: 6.5081

>NTDB_id=670449 OG946_RS29735 WP_326799041.1 6736010..6737839(-) (recQ) [Streptomyces sp. NBC_01808]
MSSTEALQVLSKVFGYESFREGQQEIIDHVVGGGDALVLMPTGGGKSLCYQIPALVRPGTGVVISPLIALMQDQVDALRA
LGVRAGFLNSTQDPDERRMVEAEFLAGEIDLLYLAPERLRVESTMRLLDRGTVALFAIDEAHCVAQWGHDFRPDYLALSA
LSERWPDVPRIALTATATKATHAEIASRLQLEHARHFVASFDRPNIQYRIVPKREPKKQLLELLRSEHAGDAGIVYCLSR
KSVEDTADFLVRNGIDALPYHAGLPAATRAEHQSRFLREEGMAIVATIAFGMGIDKPDVRYVAHLDLPKSVEGYYQETGR
AGRDGQPSTAWLAYGLQDVVQQRKLIDGSEGDDAHRRRASAHLDAMLALCESVDCRRSQLLAYFGQSGSPCGNCDTCLTP
PESWDGTVAAQKLLSTVVRLRRERRQKFGAGQIVDILMGRKTAKVIQHDHDSLSVFGVGDDLAEHEWRGVVRQLLAKGLL
AVEGDYGTLVLTEEADEVLYRGRKVPLRTEPKRAAKAAKAKSGSKRAEAVDLPAEAASLFERLRAWRGATAREQGVPAYV
IFHDATLRQIATECPGSLASLGSVSGVGENKLAKYGEAILQTVAEDDAG

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=670449 OG946_RS29735 WP_326799041.1 6736010..6737839(-) (recQ) [Streptomyces sp. NBC_01808]
ATGAGTTCCACCGAGGCGCTGCAGGTCCTCAGCAAGGTCTTCGGCTACGAGTCGTTCCGCGAGGGGCAGCAGGAGATCAT
CGACCATGTCGTGGGCGGCGGCGACGCCCTCGTGCTGATGCCCACCGGCGGCGGCAAGTCGCTGTGCTATCAGATTCCCG
CGCTGGTCAGGCCCGGTACCGGGGTGGTGATCTCGCCGCTCATCGCGCTCATGCAGGACCAGGTCGACGCCCTGCGCGCG
CTCGGCGTGCGGGCCGGGTTCCTGAACTCCACGCAGGATCCCGACGAGCGGCGGATGGTGGAGGCCGAGTTCCTCGCCGG
GGAGATCGATCTGCTCTATCTGGCGCCCGAGCGGCTGCGGGTGGAGTCCACGATGCGGCTGCTCGACCGCGGGACAGTCG
CGCTGTTCGCCATCGACGAGGCGCACTGCGTCGCGCAGTGGGGGCACGACTTCCGGCCCGACTACCTCGCGCTGTCCGCG
CTCTCCGAGCGCTGGCCGGACGTGCCGCGCATCGCGCTGACCGCGACGGCGACCAAGGCGACGCACGCGGAGATCGCGAG
CCGGCTGCAACTGGAGCACGCGCGGCACTTCGTGGCCAGCTTCGACCGGCCGAACATCCAGTACCGCATCGTGCCCAAGC
GGGAGCCGAAGAAGCAGCTCCTGGAGCTGCTGCGCAGCGAGCACGCGGGCGACGCCGGCATCGTCTACTGCCTGTCGCGC
AAGTCCGTGGAGGACACCGCGGACTTCCTCGTACGGAACGGGATCGACGCGCTCCCCTACCACGCGGGGCTGCCCGCGGC
GACCCGCGCCGAGCACCAGTCGCGGTTCCTGCGCGAGGAGGGCATGGCGATCGTCGCCACCATCGCGTTCGGCATGGGCA
TCGACAAGCCGGACGTGCGCTACGTCGCCCATCTCGACCTGCCCAAGTCCGTGGAGGGGTACTACCAGGAGACCGGCCGG
GCAGGACGCGACGGGCAGCCGTCCACCGCGTGGCTCGCGTACGGGCTGCAGGACGTGGTGCAGCAGCGCAAGCTCATCGA
CGGCTCCGAGGGCGACGACGCGCACCGGCGGCGGGCGAGCGCGCACCTCGACGCGATGCTCGCGCTCTGCGAGAGCGTCG
ACTGCCGGCGCTCGCAGCTGCTCGCGTACTTCGGCCAGAGCGGATCCCCCTGCGGCAACTGCGACACGTGCCTCACGCCC
CCCGAGTCGTGGGACGGCACGGTCGCCGCGCAGAAGCTGCTGTCCACGGTGGTGCGGCTGCGGCGCGAGCGGCGGCAGAA
GTTCGGCGCCGGGCAGATCGTCGACATCCTGATGGGCCGCAAGACGGCCAAGGTCATCCAGCACGACCACGACTCGCTCT
CGGTCTTCGGCGTCGGCGACGATCTGGCGGAGCACGAGTGGCGCGGTGTCGTACGGCAGTTGCTCGCGAAGGGGCTGCTG
GCCGTCGAGGGCGACTACGGCACGCTGGTGCTCACCGAGGAAGCCGACGAGGTGCTGTACCGGGGCCGCAAGGTGCCGCT
GCGCACCGAGCCCAAGCGGGCGGCGAAGGCGGCGAAGGCGAAGTCCGGCTCCAAGCGCGCCGAGGCCGTCGACCTGCCGG
CGGAGGCGGCGTCGCTCTTCGAGCGGCTGCGCGCGTGGCGGGGTGCGACCGCGAGGGAGCAGGGGGTGCCCGCGTACGTG
ATCTTCCACGACGCGACGCTGCGGCAGATCGCCACCGAGTGTCCCGGCTCGCTCGCCTCGCTGGGTTCCGTCAGCGGCGT
CGGCGAGAACAAGCTCGCGAAGTACGGCGAGGCGATCCTCCAGACGGTCGCGGAGGACGACGCGGGGTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(400-514)

HRDC domain (HRDC)

(538-603)

DEAD/DEAH box helicase (DEAD)

(22-179)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RecQ zinc-binding (RecQ_Zn_bind)

(337-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.203

98.851

0.388