Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   MMY79_RS10805 Genome accession   NZ_CP094657
Coordinates   2320565..2320945 (-) Length   126 a.a.
NCBI ID   WP_004792732.1    Uniprot ID   A0A372BPC4
Organism   Acinetobacter sp. XS-4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2315565..2325945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS10775 (MMY79_10770) tadA 2315575..2316078 (-) 504 WP_252608354.1 tRNA adenosine(34) deaminase TadA -
  MMY79_RS10780 (MMY79_10775) - 2316083..2317207 (-) 1125 WP_252608356.1 enoyl-CoA hydratase/isomerase family protein -
  MMY79_RS10785 (MMY79_10780) ung 2317204..2317917 (-) 714 WP_252608359.1 uracil-DNA glycosylase -
  MMY79_RS10790 (MMY79_10785) - 2317967..2318563 (-) 597 WP_252608361.1 6-carboxytetrahydropterin synthase -
  MMY79_RS10795 (MMY79_10790) gspK 2318791..2319750 (-) 960 WP_252608363.1 type II secretion system minor pseudopilin GspK -
  MMY79_RS10800 (MMY79_10795) xcpW 2319750..2320565 (-) 816 WP_252608365.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MMY79_RS10805 (MMY79_10800) xcpV 2320565..2320945 (-) 381 WP_004792732.1 type II secretion system minor pseudopilin GspI Machinery gene
  MMY79_RS10810 (MMY79_10805) - 2320935..2321489 (-) 555 WP_252608367.1 type II secretion system protein -
  MMY79_RS10815 (MMY79_10810) - 2321499..2322107 (-) 609 WP_016138305.1 TetR/AcrR family transcriptional regulator -
  MMY79_RS10820 (MMY79_10815) - 2322144..2322917 (-) 774 WP_252608369.1 TatD family hydrolase -
  MMY79_RS10825 (MMY79_10820) - 2322935..2323276 (-) 342 WP_009387057.1 PilZ domain-containing protein -
  MMY79_RS10830 (MMY79_10825) - 2323287..2324267 (-) 981 WP_252608371.1 DNA polymerase III subunit delta' -
  MMY79_RS10835 (MMY79_10830) kdsB 2324281..2325042 (-) 762 WP_252608373.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13948.12 Da        Isoelectric Point: 9.4463

>NTDB_id=670429 MMY79_RS10805 WP_004792732.1 2320565..2320945(-) (xcpV) [Acinetobacter sp. XS-4]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=670429 MMY79_RS10805 WP_004792732.1 2320565..2320945(-) (xcpV) [Acinetobacter sp. XS-4]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTAGCTTTAGCAATTTTTGCGGTAGCTGCCGTCGCGTTAACTAA
AGTGGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCTATGAATGAAGTTG
CTTTAATGGAGATAAATCAAGAATGGCTTCAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGTGAAACCTGGCAGATT
GATAAATCTGCTGAATCTACAGTCAGCCCGAATGTTCAGAAAGTGGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
GAAAGTTCAAAATGGTATTACCCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372BPC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937