Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MMY79_RS02045 Genome accession   NZ_CP094657
Coordinates   425632..426261 (-) Length   209 a.a.
NCBI ID   WP_252611658.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420632..431261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS02010 (MMY79_02010) mlaE 420959..421738 (+) 780 WP_252611645.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  MMY79_RS02015 (MMY79_02015) - 421738..422421 (+) 684 WP_252611647.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MMY79_RS02020 (MMY79_02020) - 422448..423089 (+) 642 WP_252611649.1 ABC transporter substrate-binding protein -
  MMY79_RS02025 (MMY79_02025) - 423100..423387 (+) 288 WP_252611652.1 STAS domain-containing protein -
  MMY79_RS02030 (MMY79_02030) - 423460..424473 (-) 1014 WP_004789661.1 CorA family divalent cation transporter -
  MMY79_RS02035 (MMY79_02035) - 424632..425213 (+) 582 WP_252611654.1 TIGR00730 family Rossman fold protein -
  MMY79_RS02040 (MMY79_02040) - 425228..425626 (+) 399 WP_252611656.1 NUDIX domain-containing protein -
  MMY79_RS02045 (MMY79_02045) comF 425632..426261 (-) 630 WP_252611658.1 phosphoribosyltransferase family protein Machinery gene
  MMY79_RS02050 (MMY79_02050) recG 426254..428299 (-) 2046 WP_252611660.1 ATP-dependent DNA helicase RecG -
  MMY79_RS02055 (MMY79_02055) - 428320..429135 (+) 816 WP_252611662.1 NAD(P)H-binding protein -
  MMY79_RS02060 (MMY79_02060) - 429215..430198 (+) 984 WP_252611664.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24049.14 Da        Isoelectric Point: 9.7051

>NTDB_id=670420 MMY79_RS02045 WP_252611658.1 425632..426261(-) (comF) [Acinetobacter sp. XS-4]
MFNFLNPQHLIQLLSPCLLCESGVREKHSLCKDCWKQLPWLKQTIQRNNQSVLVACDYAYPVSRIIQQFKYEQKLHYQIL
LGEILQQLKFSKAQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAL
TQEKQRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHAACVAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=670420 MMY79_RS02045 WP_252611658.1 425632..426261(-) (comF) [Acinetobacter sp. XS-4]
ATGTTTAATTTCTTAAATCCGCAGCATCTTATTCAATTGCTCTCACCTTGTTTGTTATGTGAGTCAGGTGTCCGAGAAAA
ACATTCTCTCTGTAAGGACTGTTGGAAGCAGTTACCTTGGCTTAAACAAACAATTCAACGTAATAATCAATCAGTTCTTG
TGGCCTGTGATTATGCTTATCCAGTGAGCCGGATCATTCAGCAGTTTAAATATGAACAAAAACTACATTATCAAATCCTG
CTAGGTGAAATTTTACAACAACTCAAATTTTCCAAGGCACAGGCTATCGTACCTATGCCTATTTCGAATCAACGTTTAAT
CGAACGTGGTTTCAATCAGTCGTTGTTACTCGCAAATATTTTAAGCAAACAATTAAAAATACCTGTTTGGCAGCCGGTAC
AACGTCTTGCTGAACATTCGCAAAAAGGGCTTTCTCGACTGGAACGCTTTGAGAACATTGAACAACAGTTTATTGCGCTT
ACTCAAGAAAAACAACGTTATCGCCGCGTTCTTATTATTGATGACGTAATAACCACGGGAAGCTCTATTCATGCGCTCAG
TCAAGCACTTAAACAATTAGGCTGCACATCCATCCATGCCGCTTGTGTAGCGGCAACTTTGACTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

86.124

100

0.861
  comF Acinetobacter baumannii D1279779

85.167

100

0.852