Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MMY79_RS01670 Genome accession   NZ_CP094657
Coordinates   350322..350798 (+) Length   158 a.a.
NCBI ID   WP_252611553.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345322..355798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS01660 (MMY79_01660) - 345839..346621 (+) 783 WP_252611549.1 pilus assembly protein PilX -
  MMY79_RS01665 (MMY79_01665) - 346637..350308 (+) 3672 WP_252611551.1 PilC/PilY family type IV pilus protein -
  MMY79_RS01670 (MMY79_01670) comE 350322..350798 (+) 477 WP_252611553.1 type IV pilin protein Machinery gene
  MMY79_RS01675 (MMY79_01675) - 350792..351256 (+) 465 WP_289781522.1 type IV pilin protein -
  MMY79_RS01680 (MMY79_01680) rpsP 351403..351654 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  MMY79_RS01685 (MMY79_01685) rimM 351675..352223 (+) 549 WP_004789777.1 ribosome maturation factor RimM -
  MMY79_RS01690 (MMY79_01690) trmD 352266..353021 (+) 756 WP_252611554.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MMY79_RS01695 (MMY79_01695) rplS 353241..353609 (+) 369 WP_016140014.1 50S ribosomal protein L19 -
  MMY79_RS01700 (MMY79_01700) - 353662..354603 (-) 942 WP_252613404.1 triacylglycerol lipase -
  MMY79_RS01705 (MMY79_01705) - 354720..355751 (-) 1032 WP_252611556.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17273.69 Da        Isoelectric Point: 9.8709

>NTDB_id=670419 MMY79_RS01670 WP_252611553.1 350322..350798(+) (comE) [Acinetobacter sp. XS-4]
MKSKFTYSFGFTLIELMVVVVIVAIFAAVAIPSYQAYVLRADASRAQQQIQQIAIQLARQKSRNFNYKGFSTGATAPVLL
PVGAIGSAVKYQITVRDGDDTTKNLTDTIALGQNWVIRAEASDPNNFTFLFNSNGLRCKNKTTNNVTYTTCGTGGESW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=670419 MMY79_RS01670 WP_252611553.1 350322..350798(+) (comE) [Acinetobacter sp. XS-4]
ATGAAAAGTAAATTCACATATTCTTTCGGCTTTACTCTTATTGAGCTAATGGTTGTGGTAGTGATTGTTGCGATTTTTGC
GGCAGTTGCAATCCCTTCATATCAAGCATATGTTCTGCGCGCTGATGCTTCACGTGCACAACAACAAATTCAACAAATCG
CCATACAACTCGCGCGTCAGAAATCTAGAAATTTTAATTATAAAGGTTTTTCTACTGGTGCTACCGCACCAGTACTTTTG
CCTGTTGGAGCGATTGGTAGTGCTGTTAAATATCAAATAACAGTACGAGATGGTGACGATACGACGAAAAACTTAACGGA
TACTATTGCTTTAGGGCAAAACTGGGTTATCAGGGCAGAGGCTTCAGACCCTAATAATTTTACTTTTTTATTTAATAGTA
ACGGGTTGCGATGTAAGAACAAAACCACTAACAATGTTACTTATACAACTTGTGGTACTGGAGGGGAGTCGTGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

47.273

100

0.494
  pilY2 Acinetobacter baumannii D1279779

47.134

99.367

0.468