Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   MRD09_RS03760 Genome accession   NZ_CP094655
Coordinates   740387..741658 (+) Length   423 a.a.
NCBI ID   WP_012391093.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain SCB0035     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 735387..746658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRD09_RS03730 (MRD09_03730) rpsB 735546..736325 (+) 780 WP_003681957.1 30S ribosomal protein S2 -
  MRD09_RS03735 (MRD09_03735) tsf 736416..737294 (+) 879 WP_015638804.1 translation elongation factor Ts -
  MRD09_RS03740 (MRD09_03740) pyrH 737375..738100 (+) 726 WP_003681954.1 UMP kinase -
  MRD09_RS03745 (MRD09_03745) frr 738100..738660 (+) 561 WP_003685219.1 ribosome recycling factor -
  MRD09_RS03750 (MRD09_03750) - 738793..739560 (+) 768 WP_015638805.1 isoprenyl transferase -
  MRD09_RS03755 (MRD09_03755) - 739577..740365 (+) 789 WP_012391092.1 phosphatidate cytidylyltransferase -
  MRD09_RS03760 (MRD09_03760) eeP 740387..741658 (+) 1272 WP_012391093.1 RIP metalloprotease RseP Regulator
  MRD09_RS03765 (MRD09_03765) - 741692..743413 (+) 1722 WP_015638806.1 proline--tRNA ligase -

Sequence


Protein


Download         Length: 423 a.a.        Molecular weight: 46217.61 Da        Isoelectric Point: 6.3997

>NTDB_id=670361 MRD09_RS03760 WP_012391093.1 740387..741658(+) (eeP) [Limosilactobacillus fermentum strain SCB0035]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGTDEDEDELRP
GTPVTLQTNEEGKVTLINASEKETLLEGIPLRIVDSDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTEVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKDSVAAKAGLVSGDKITRVATTKVSTWND
ISQAISPNPGKKLAVTYQRDGKTYHTTVTPKATKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPEKVEGILNLA
GFAILMILMVLVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=670361 MRD09_RS03760 WP_012391093.1 740387..741658(+) (eeP) [Limosilactobacillus fermentum strain SCB0035]
TTGATCATCACCATCATTACTTTTATCATCGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCCGGGATTTTGGTGCGCGAGTTTTCGATTGGGATGGGGCCCAAGGTTTGGTGGCGGCGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTTGGGGGCTACGTCCGCCTGGCCGGGACCGATGAAGATGAAGACGAACTCCGTCCC
GGGACGCCGGTGACCTTGCAAACCAATGAGGAAGGCAAGGTGACCCTGATCAACGCCAGCGAAAAGGAAACCCTGTTGGA
GGGGATTCCGCTGCGGATCGTTGACAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGAGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTCCAATCGGCCAGCTTACCGGCGCGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCCT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTTTTGGGCGGGGTGACCAAGGATT
CGGTGGCTGCCAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCAGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAACCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCGATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGGCCACCAAACAGGGGAGCCAAACGGTCGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCCTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCCGGCACCTCGCAGGCCACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCCGAAAAAGTGGAGGGGATTTTGAATTTGGCT
GGCTTTGCCATCTTGATGATCCTGATGGTCCTTGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains


Predicted by InterproScan.

(7-408)

(209-269)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.482

  eeP Streptococcus thermophilus LMD-9

48.113

100

0.482