Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MP622_RS15840 Genome accession   NZ_CP094643
Coordinates   3359479..3360111 (-) Length   210 a.a.
NCBI ID   WP_243793565.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3354479..3365111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS15805 (MP622_15805) mlaE 3354773..3355552 (+) 780 WP_243791761.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  MP622_RS15810 (MP622_15810) - 3355552..3356220 (+) 669 WP_016168627.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MP622_RS15815 (MP622_15815) - 3356240..3356872 (+) 633 WP_016168626.1 ABC transporter substrate-binding protein -
  MP622_RS15820 (MP622_15820) - 3356885..3357169 (+) 285 WP_044739641.1 STAS domain-containing protein -
  MP622_RS15825 (MP622_15825) - 3357275..3358288 (-) 1014 WP_016168624.1 magnesium and cobalt transport protein CorA -
  MP622_RS15830 (MP622_15830) - 3358444..3359043 (+) 600 WP_243791763.1 TIGR00730 family Rossman fold protein -
  MP622_RS15835 (MP622_15835) - 3359043..3359444 (+) 402 WP_243791765.1 NUDIX domain-containing protein -
  MP622_RS15840 (MP622_15840) comF 3359479..3360111 (-) 633 WP_243793565.1 phosphoribosyltransferase family protein Machinery gene
  MP622_RS15845 (MP622_15845) recG 3360104..3362149 (-) 2046 WP_243791767.1 ATP-dependent DNA helicase RecG -
  MP622_RS15850 (MP622_15850) - 3362183..3362992 (+) 810 WP_243791769.1 NAD(P)H-binding protein -
  MP622_RS15855 (MP622_15855) - 3363173..3363400 (+) 228 WP_243793566.1 DUF6500 family protein -
  MP622_RS15860 (MP622_15860) - 3363818..3364234 (-) 417 WP_243791771.1 NF045616 family extracytoplasmic (lipo)protein -
  MP622_RS15865 (MP622_15865) - 3364238..3364906 (-) 669 WP_243791773.1 zinc protease -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24511.39 Da        Isoelectric Point: 9.0507

>NTDB_id=670342 MP622_RS15840 WP_243793565.1 3359479..3360111(-) (comF) [Acinetobacter sp. PK01]
MFKPFLSSAQQWLHSVLPCQFCGLERGRYASLCQDCWNHLPWFKQYVQRQEIEVQVACHYAYPIDRVIQQFKYEQQLHFQ
ILLTGLLKQLDYRQIQAIVPMPISTQRLAERGYNQSVILAQRLSQQLNIPVWQPIQRQHQHSQKGLSRLERLDSIEQQFK
IAPTNTLRYRRVLMLDDVVTTGSSLKALQQALNELGCRKIEAACIAAAQC

Nucleotide


Download         Length: 633 bp        

>NTDB_id=670342 MP622_RS15840 WP_243793565.1 3359479..3360111(-) (comF) [Acinetobacter sp. PK01]
ATGTTTAAACCTTTTTTATCTAGCGCTCAGCAATGGCTACATTCAGTACTACCATGTCAGTTTTGTGGACTTGAGCGTGG
CCGCTATGCGAGTCTCTGTCAAGATTGCTGGAACCATTTACCTTGGTTCAAACAATACGTGCAACGTCAAGAAATTGAGG
TTCAAGTCGCCTGCCATTATGCCTATCCCATTGATCGTGTGATTCAGCAATTTAAATATGAGCAACAACTACATTTTCAA
ATTTTGCTGACTGGACTGCTCAAGCAACTGGACTATCGACAGATTCAGGCCATCGTTCCCATGCCAATTTCCACTCAACG
TTTGGCTGAACGAGGTTATAACCAAAGTGTCATTCTGGCACAGCGTTTGAGTCAGCAGTTAAATATTCCTGTTTGGCAAC
CTATTCAACGGCAACATCAGCATTCACAGAAAGGCTTAAGCCGTTTAGAACGACTGGATAGCATAGAACAGCAATTTAAA
ATCGCCCCAACAAACACTCTGCGTTATCGTCGCGTGTTAATGCTAGATGATGTGGTGACAACAGGCAGCTCACTTAAAGC
ATTGCAACAAGCTCTAAATGAACTGGGCTGCCGAAAAATTGAAGCTGCCTGTATTGCAGCAGCTCAATGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.287

99.524

0.6
  comF Acinetobacter baumannii D1279779

59.809

99.524

0.595