Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MP622_RS15575 Genome accession   NZ_CP094643
Coordinates   3305012..3305455 (+) Length   147 a.a.
NCBI ID   WP_151504383.1    Uniprot ID   A0A5N4WPN6
Organism   Acinetobacter sp. PK01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3300012..3310455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS15565 (MP622_15565) pilY1 3300607..3304461 (+) 3855 WP_243791717.1 PilC/PilY family type IV pilus protein Machinery gene
  MP622_RS15570 (MP622_15570) - 3304542..3305012 (+) 471 WP_243793563.1 type IV pilin protein -
  MP622_RS15575 (MP622_15575) comF 3305012..3305455 (+) 444 WP_151504383.1 type IV pilin protein Machinery gene
  MP622_RS15580 (MP622_15580) rpsP 3305602..3305859 (+) 258 WP_016168678.1 30S ribosomal protein S16 -
  MP622_RS15585 (MP622_15585) rimM 3305885..3306433 (+) 549 WP_151504382.1 ribosome maturation factor RimM -
  MP622_RS15590 (MP622_15590) trmD 3306461..3307195 (+) 735 WP_151504381.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MP622_RS15595 (MP622_15595) rplS 3307383..3307757 (+) 375 WP_016168675.1 50S ribosomal protein L19 -
  MP622_RS15600 (MP622_15600) - 3307814..3308785 (-) 972 WP_151504380.1 triacylglycerol lipase -
  MP622_RS15605 (MP622_15605) - 3308951..3309934 (-) 984 WP_016168673.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15759.84 Da        Isoelectric Point: 8.9890

>NTDB_id=670341 MP622_RS15575 WP_151504383.1 3305012..3305455(+) (comF) [Acinetobacter sp. PK01]
MKGFTLIELMIVVAIIGILAAIAYPSYTGYKVRVQRADAQAEMLQVARSLANYKLANSNFAGRTLSNVHGSAQTSDGMYD
FTLTDRNNVALTNSSANTNGWLLIATPKSGTVQDGNGVICLNDQGQKYWSKAATTCVLSASSTWDGR

Nucleotide


Download         Length: 444 bp        

>NTDB_id=670341 MP622_RS15575 WP_151504383.1 3305012..3305455(+) (comF) [Acinetobacter sp. PK01]
ATGAAGGGCTTTACACTTATCGAGTTAATGATTGTTGTAGCAATTATTGGAATTCTTGCGGCAATTGCTTACCCATCTTA
TACAGGTTACAAGGTCCGTGTACAAAGAGCTGATGCACAAGCTGAAATGTTACAAGTTGCACGTAGTTTGGCGAATTATA
AACTTGCCAACAGTAACTTTGCGGGAAGAACATTATCCAATGTGCATGGTTCGGCTCAAACTTCTGATGGGATGTATGAT
TTCACGCTCACAGATAGAAATAATGTTGCATTAACAAATAGTTCTGCTAATACGAATGGTTGGTTGTTGATTGCTACACC
TAAATCAGGGACAGTTCAAGATGGTAATGGGGTTATCTGTTTAAATGATCAAGGACAAAAATACTGGTCAAAAGCTGCAA
CCACATGTGTGCTGTCAGCTAGTTCAACTTGGGATGGTCGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(25-120)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N4WPN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.795

99.32

0.544
  pilE Acinetobacter baumannii D1279779

46.154

97.279

0.449
  comE Acinetobacter baylyi ADP1

32.143

100

0.367