Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MP622_RS14985 Genome accession   NZ_CP094643
Coordinates   3177537..3178136 (+) Length   199 a.a.
NCBI ID   WP_243791632.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3172537..3183136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS14960 (MP622_14960) - 3172656..3173462 (-) 807 WP_243791628.1 SDR family oxidoreductase -
  MP622_RS14965 (MP622_14965) - 3173556..3173927 (-) 372 WP_243791630.1 MerR family transcriptional regulator -
  MP622_RS14970 (MP622_14970) tenA 3173999..3174673 (-) 675 WP_104441358.1 thiaminase II -
  MP622_RS14975 (MP622_14975) - 3174885..3175970 (+) 1086 WP_016168791.1 DUF475 domain-containing protein -
  MP622_RS14980 (MP622_14980) - 3176121..3177485 (+) 1365 WP_016168790.1 MFS transporter -
  MP622_RS14985 (MP622_14985) ssb 3177537..3178136 (+) 600 WP_243791632.1 single-stranded DNA-binding protein Machinery gene
  MP622_RS14990 (MP622_14990) - 3178663..3180102 (+) 1440 WP_243791634.1 amino acid permease -
  MP622_RS14995 (MP622_14995) - 3180171..3181670 (-) 1500 WP_243791636.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  MP622_RS15000 (MP622_15000) gabT 3181827..3183125 (+) 1299 WP_016168786.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21825.43 Da        Isoelectric Point: 6.4819

>NTDB_id=670332 MP622_RS14985 WP_243791632.1 3177537..3178136(+) (ssb) [Acinetobacter sp. PK01]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEGVPSDNAGFNQPRFNNNQNSGYGNNTGYNNNNNNQGYGNTGGFN
NNQGGGNQGGYGNNNSGGFAPKATPSAPAPADLDDDLPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=670332 MP622_RS14985 WP_243791632.1 3177537..3178136(+) (ssb) [Acinetobacter sp. PK01]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAATGGGGGCTC
GCTTACTCAGTTTTCAATCGCAACCAGCGATTCTTGGACTGACAAAAGCACAGGTGAACGTAAAGAACAAACTGAATGGC
ACCGAATTGTCTTGCACAATCGTTTAGGTGAAATTGCTCAGCAATATTTACGTAAAGGTTCGAAGGTTTATATTGAAGGT
TCATTGCGTACGCGCCAATGGACAGATCAAAATGGTCAAGAACGTTACACCACAGAGATTCGTGGTGAACAAATGCAAAT
GCTTGATTCAAACCGTCAGCAAGGTGAAGGTGTACCAAGCGATAACGCTGGGTTTAACCAACCGCGTTTTAACAATAACC
AGAACAGTGGTTATGGCAATAACACGGGTTATAACAACAATAATAATAACCAAGGTTATGGCAACACAGGCGGTTTTAAC
AATAATCAGGGCGGTGGTAACCAAGGTGGTTATGGCAACAATAATTCAGGTGGTTTTGCACCTAAAGCAACACCTTCTGC
ACCAGCACCTGCAGATTTGGATGATGATTTACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.508
  ssb Vibrio cholerae strain A1552

55.725

65.829

0.367