Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MTO68_RS20855 Genome accession   NZ_CP094620
Coordinates   4402055..4402684 (+) Length   209 a.a.
NCBI ID   WP_244014194.1    Uniprot ID   -
Organism   Acinetobacter sp. NyZ410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4397055..4407684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS20840 (MTO68_20840) - 4398375..4398887 (-) 513 WP_244014190.1 alpha-ketoglutarate-dependent dioxygenase AlkB -
  MTO68_RS20845 (MTO68_20845) - 4398908..4399729 (-) 822 WP_244014192.1 NAD-dependent epimerase/dehydratase family protein -
  MTO68_RS20850 (MTO68_20850) recG 4399789..4401834 (+) 2046 WP_209827912.1 ATP-dependent DNA helicase RecG -
  MTO68_RS20855 (MTO68_20855) comF 4402055..4402684 (+) 630 WP_244014194.1 phosphoribosyltransferase family protein Machinery gene
  MTO68_RS20860 (MTO68_20860) - 4402737..4403135 (-) 399 WP_034614399.1 NUDIX domain-containing protein -
  MTO68_RS20865 (MTO68_20865) - 4403213..4403830 (-) 618 WP_004816846.1 TIGR00730 family Rossman fold protein -
  MTO68_RS20870 (MTO68_20870) - 4403989..4405002 (+) 1014 WP_004816845.1 magnesium and cobalt transport protein CorA -
  MTO68_RS20875 (MTO68_20875) - 4405118..4405405 (-) 288 WP_034614405.1 toluene tolerance protein -
  MTO68_RS20880 (MTO68_20880) - 4405433..4406053 (-) 621 WP_004816842.1 ABC transporter substrate-binding protein -
  MTO68_RS20885 (MTO68_20885) - 4406075..4406752 (-) 678 WP_244014196.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MTO68_RS20890 (MTO68_20890) mlaE 4406752..4407531 (-) 780 WP_244014197.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24431.57 Da        Isoelectric Point: 9.3647

>NTDB_id=670241 MTO68_RS20855 WP_244014194.1 4402055..4402684(+) (comF) [Acinetobacter sp. NyZ410]
MLQFTNQLLHKSVQSLSPCLLCGIDRQQQHSLCNTCWNELPWYKQHIERHQHQIVCAHRYDFPIDRIIQVYKYEQQLQYQ
TLLAQSLLNLSLPKIQAIVPMPISTARLKERGYNQMLIIAKIMARQLNIPVWQPVIREAQHSQKGLSRIERLENIEYQFK
MIKTEKRKYKKVLIIDDVVTTGSSIHALTHALENLGCQQIYSVCIAAAQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=670241 MTO68_RS20855 WP_244014194.1 4402055..4402684(+) (comF) [Acinetobacter sp. NyZ410]
ATGCTCCAATTTACCAATCAACTTCTCCATAAAAGCGTACAAAGCCTTTCCCCTTGCCTCCTTTGTGGAATAGATCGACA
ACAACAGCATTCTCTTTGTAACACGTGTTGGAACGAACTTCCTTGGTATAAGCAGCATATAGAACGGCATCAACACCAGA
TTGTTTGTGCTCACCGTTACGACTTCCCAATTGATCGCATCATCCAAGTCTATAAATATGAACAACAACTGCAATATCAG
ACACTATTGGCACAAAGTTTATTGAATTTAAGCCTACCTAAAATTCAAGCCATTGTTCCTATGCCAATTTCTACTGCTCG
TTTAAAAGAACGTGGCTACAATCAAATGCTGATTATCGCCAAAATCATGGCAAGGCAATTAAATATCCCAGTATGGCAAC
CCGTGATTCGAGAAGCACAACATTCACAAAAAGGTTTAAGTAGAATTGAGCGCTTAGAAAATATTGAATATCAATTTAAA
ATGATCAAAACAGAAAAAAGAAAATATAAAAAAGTACTGATTATTGATGATGTCGTGACCACAGGCAGTTCAATTCATGC
TTTAACCCATGCTTTAGAAAACTTGGGCTGCCAGCAGATTTATAGCGTCTGCATTGCCGCAGCTCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.513

93.301

0.565
  comF Acinetobacter baumannii D1279779

60

93.301

0.56