Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   MST18_RS09760 Genome accession   NZ_CP094555
Coordinates   2012570..2012962 (-) Length   130 a.a.
NCBI ID   WP_078188947.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2007570..2017962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS09730 (MST18_09720) tadA 2007753..2008304 (-) 552 WP_078193658.1 tRNA adenosine(34) deaminase TadA -
  MST18_RS09735 (MST18_09725) - 2008312..2009433 (-) 1122 WP_078188941.1 enoyl-CoA hydratase/isomerase family protein -
  MST18_RS09740 (MST18_09730) ung 2009430..2010143 (-) 714 WP_078193660.1 uracil-DNA glycosylase -
  MST18_RS09745 (MST18_09735) - 2010180..2010776 (-) 597 WP_180077646.1 6-carboxytetrahydropterin synthase -
  MST18_RS09750 (MST18_09740) gspK 2010907..2011854 (-) 948 WP_180094183.1 type II secretion system minor pseudopilin GspK -
  MST18_RS09755 (MST18_09745) xcpW 2011894..2012523 (-) 630 WP_180133084.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MST18_RS09760 (MST18_09750) xcpV 2012570..2012962 (-) 393 WP_078188947.1 type II secretion system minor pseudopilin GspI Machinery gene
  MST18_RS09765 (MST18_09755) - 2012952..2013509 (-) 558 WP_078193664.1 type II secretion system protein -
  MST18_RS09770 (MST18_09760) - 2013519..2014133 (-) 615 WP_078193665.1 TetR/AcrR family transcriptional regulator -
  MST18_RS09775 (MST18_09765) - 2014176..2014949 (-) 774 WP_180132992.1 TatD family hydrolase -
  MST18_RS09780 (MST18_09770) - 2014981..2015322 (-) 342 WP_111885061.1 PilZ domain-containing protein -
  MST18_RS09785 (MST18_09775) - 2015338..2016321 (-) 984 WP_180132991.1 DNA polymerase III subunit delta' -
  MST18_RS09790 (MST18_09780) kdsB 2016335..2017096 (-) 762 WP_180077632.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14353.42 Da        Isoelectric Point: 5.1186

>NTDB_id=670178 MST18_RS09760 WP_078188947.1 2012570..2012962(-) (xcpV) [Acinetobacter sp. YH12068_T]
MRAKGFTLLEVMVALAIFATAAMALSNVAMQYTQSTAHAILRNKAQFVALNEIAKMEINREWMTGTASKQVTEQGEQWQI
DKKAQATISPNVQRIDIQVSLMNAETGDVEAGISSLVFFNYKAPLDENNN

Nucleotide


Download         Length: 393 bp        

>NTDB_id=670178 MST18_RS09760 WP_078188947.1 2012570..2012962(-) (xcpV) [Acinetobacter sp. YH12068_T]
ATGCGGGCTAAAGGGTTTACGCTACTTGAAGTCATGGTGGCATTGGCGATTTTTGCGACGGCGGCAATGGCTTTGTCTAA
TGTTGCGATGCAATATACACAGTCGACAGCACACGCAATTTTAAGAAATAAAGCACAATTCGTCGCGTTGAATGAAATCG
CTAAGATGGAAATCAATCGTGAATGGATGACAGGTACTGCATCTAAACAAGTCACTGAACAAGGCGAACAATGGCAAATT
GACAAAAAAGCCCAAGCCACCATTAGTCCAAATGTACAACGTATTGATATCCAAGTGAGTTTGATGAATGCTGAAACAGG
CGATGTTGAAGCAGGGATTAGCAGTTTGGTGTTCTTTAACTATAAGGCTCCGTTGGATGAAAATAATAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(45-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

72.727

93.077

0.677