Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MST18_RS02020 Genome accession   NZ_CP094555
Coordinates   420290..420922 (-) Length   210 a.a.
NCBI ID   WP_180133466.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415290..425922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS01985 (MST18_01985) mlaE 415574..416353 (+) 780 WP_078189301.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  MST18_RS01990 (MST18_01990) - 416353..417033 (+) 681 WP_180133465.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MST18_RS01995 (MST18_01995) - 417051..417686 (+) 636 WP_078189299.1 phospholipid-binding protein MlaC -
  MST18_RS02000 (MST18_02000) - 417726..417989 (+) 264 WP_218948628.1 lipid asymmetry maintenance protein MlaB -
  MST18_RS02005 (MST18_02005) - 418065..419078 (-) 1014 WP_078189297.1 CorA family divalent cation transporter -
  MST18_RS02010 (MST18_02010) - 419234..419842 (+) 609 WP_180126855.1 TIGR00730 family Rossman fold protein -
  MST18_RS02015 (MST18_02015) - 419839..420246 (+) 408 WP_180106901.1 NUDIX domain-containing protein -
  MST18_RS02020 (MST18_02020) comF 420290..420922 (-) 633 WP_180133466.1 ComF family protein Machinery gene
  MST18_RS02025 (MST18_02025) recG 421062..423107 (-) 2046 WP_180133467.1 ATP-dependent DNA helicase RecG -
  MST18_RS02030 (MST18_02030) - 423167..423946 (+) 780 WP_180133468.1 NAD-dependent epimerase/dehydratase family protein -
  MST18_RS16605 - 424098..424337 (+) 240 WP_373686671.1 hypothetical protein -
  MST18_RS16610 - 424440..424694 (+) 255 WP_373686672.1 hypothetical protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24494.65 Da        Isoelectric Point: 9.4605

>NTDB_id=670167 MST18_RS02020 WP_180133466.1 420290..420922(-) (comF) [Acinetobacter sp. YH12068_T]
MLQSIQRYIQKGMQSVSPCLLCGIDRQQHHSLCTDCWAQLPWFKQMVNRHEHSISCAFHYDFPIDRIIQSYKYEQQLHYQ
NLLAQSLLSMRLARVQAIVPMPISVERLKDRGYNQMLLVAHMMAKQLRIPVWQPVIRQAQHAQKGLSRLERLENIEQQFI
IDPTEKRRFRKVLIIDDVVTTGSSIHALSKLLHQLHCTQVYAACIAAAQP

Nucleotide


Download         Length: 633 bp        

>NTDB_id=670167 MST18_RS02020 WP_180133466.1 420290..420922(-) (comF) [Acinetobacter sp. YH12068_T]
ATGCTCCAATCTATCCAACGCTACATCCAAAAAGGGATGCAGAGCGTTTCCCCTTGCTTGCTCTGTGGTATCGATCGACA
ACAACATCATTCGCTTTGTACCGACTGCTGGGCACAACTGCCTTGGTTTAAACAAATGGTTAATCGCCATGAACACAGCA
TCTCTTGTGCCTTTCACTATGATTTTCCAATAGATCGCATCATCCAAAGCTATAAGTATGAGCAACAATTGCACTATCAA
AATTTACTGGCACAGAGCCTTTTAAGCATGCGCTTAGCTCGAGTTCAGGCCATTGTTCCCATGCCTATTTCAGTTGAACG
CCTCAAGGACCGTGGATACAACCAAATGCTGCTCGTTGCACACATGATGGCAAAGCAATTGCGCATCCCTGTTTGGCAAC
CCGTGATTCGTCAAGCACAGCACGCTCAAAAAGGTTTAAGTCGGCTAGAACGCCTAGAAAATATCGAACAGCAATTTATT
ATCGACCCAACTGAAAAACGCCGTTTCCGTAAAGTCCTCATCATTGATGATGTGGTGACCACGGGGAGTTCAATCCATGC
ATTAAGTAAGCTGTTACATCAGCTACATTGCACGCAGGTATATGCCGCATGCATTGCTGCGGCACAGCCTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(155-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.735

93.333

0.576
  comF Acinetobacter baumannii D1279779

61.224

93.333

0.571