Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MST18_RS01545 Genome accession   NZ_CP094555
Coordinates   325907..326593 (+) Length   228 a.a.
NCBI ID   WP_078189382.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320907..331593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS01530 (MST18_01530) - 321286..322089 (+) 804 WP_180133233.1 putative RNA methyltransferase -
  MST18_RS01535 (MST18_01535) ponA 322143..324683 (-) 2541 WP_180133231.1 penicillin-binding protein PBP1a -
  MST18_RS01540 (MST18_01540) comM 324849..325907 (+) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  MST18_RS01545 (MST18_01545) pilN 325907..326593 (+) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  MST18_RS01550 (MST18_01550) pilO 326590..327312 (+) 723 WP_180133229.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST18_RS01555 (MST18_01555) pilP 327309..327836 (+) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST18_RS01560 (MST18_01560) pilQ 327898..330012 (+) 2115 WP_180133283.1 type IV pilus secretin PilQ Machinery gene
  MST18_RS01565 (MST18_01565) aroK 330049..330594 (+) 546 WP_078189378.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25390.94 Da        Isoelectric Point: 5.7844

>NTDB_id=670163 MST18_RS01545 WP_078189382.1 325907..326593(+) (pilN) [Acinetobacter sp. YH12068_T]
MAKINLLPWRDELREKRKKEFIALCIGAFLIGVIGVGLTWLYFDHKLKDQEQANQLIISHNQNLDVQLKSLDGLQEQRNA
IIERMKLIQGLQGQRPIAVHLVDELVRVTPANMYITKFERNGDKFMIEGRAESPNTVADLLRNLEASPWYRNAFMSSFLV
AEEKKDKAPTSVVPRVEESYGAFTVTADLEQIAQPTINDPAANAGQSASSAQTSDAQTAATPTPEAAK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=670163 MST18_RS01545 WP_078189382.1 325907..326593(+) (pilN) [Acinetobacter sp. YH12068_T]
ATGGCAAAAATTAACTTGCTCCCTTGGCGTGATGAGCTAAGAGAGAAACGAAAAAAAGAATTTATTGCACTTTGTATTGG
GGCTTTCTTAATTGGGGTAATTGGGGTTGGTTTAACATGGTTGTACTTTGATCACAAATTAAAAGATCAAGAACAAGCGA
ACCAATTGATTATCAGTCATAACCAAAACTTAGATGTTCAATTAAAGTCTTTGGATGGTTTACAAGAACAGCGTAATGCC
ATTATTGAACGAATGAAGTTGATTCAAGGCTTACAAGGTCAACGTCCAATCGCTGTACATCTTGTAGATGAATTGGTTCG
TGTGACACCTGCCAATATGTACATCACAAAATTTGAACGTAATGGCGACAAATTTATGATCGAAGGGCGTGCGGAAAGTC
CAAACACTGTTGCAGATTTACTGCGTAATTTGGAAGCATCACCTTGGTATCGTAATGCCTTCATGAGCTCATTCCTTGTG
GCGGAAGAGAAAAAAGACAAAGCGCCGACGTCAGTGGTTCCTCGCGTAGAAGAATCTTATGGTGCATTTACTGTGACTGC
TGATTTGGAGCAAATTGCGCAGCCGACCATTAATGATCCAGCAGCAAATGCAGGACAGTCAGCTTCATCGGCGCAAACAT
CTGACGCACAAACTGCAGCAACACCAACTCCGGAGGCTGCAAAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.014

93.421

0.645
  comN Acinetobacter baylyi ADP1

71.503

84.649

0.605