Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MST18_RS01560 Genome accession   NZ_CP094555
Coordinates   327898..330012 (+) Length   704 a.a.
NCBI ID   WP_180133283.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322898..335012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS01540 (MST18_01540) comM 324849..325907 (+) 1059 WP_078192532.1 pilus assembly protein PilM Machinery gene
  MST18_RS01545 (MST18_01545) pilN 325907..326593 (+) 687 WP_078189382.1 PilN domain-containing protein Machinery gene
  MST18_RS01550 (MST18_01550) pilO 326590..327312 (+) 723 WP_180133229.1 type 4a pilus biogenesis protein PilO Machinery gene
  MST18_RS01555 (MST18_01555) pilP 327309..327836 (+) 528 WP_078192530.1 pilus assembly protein PilP Machinery gene
  MST18_RS01560 (MST18_01560) pilQ 327898..330012 (+) 2115 WP_180133283.1 type IV pilus secretin PilQ Machinery gene
  MST18_RS01565 (MST18_01565) aroK 330049..330594 (+) 546 WP_078189378.1 shikimate kinase AroK -
  MST18_RS01570 (MST18_01570) aroB 330609..331691 (+) 1083 WP_180133227.1 3-dehydroquinate synthase -
  MST18_RS01575 (MST18_01575) - 331699..332538 (+) 840 WP_180133225.1 hypothetical protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 76613.69 Da        Isoelectric Point: 6.2157

>NTDB_id=670166 MST18_RS01560 WP_180133283.1 327898..330012(+) (pilQ) [Acinetobacter sp. YH12068_T]
MNHVFRQFSMGAVAMAMMQVANAQVSVTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLDQPSRLVLDFDKAQQNLKQSSI
PVATAEASTVDVSSDAQRARLTVNLANAGAFTTRVEGNTFILKINSAQAANYVQPVAQRQQQGISNIGFHRGSNGEGQVV
VDLLGGNTPVDVQQQGSKVVIRTLGNKVPAHLTRRLNVNDFATPVATVDAHNDGGNGVITIQSTGSYEYMAYQTDNKLTV
SLKRPEDKNPLRPKAANHYIGKKISLDFQDIEVRRVLQLLADFTEINMVAADTVQGNITLRLKDVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKALRQSMKLAPLQTEYLTLSYAKAAELEKLITQSKTAGNSGSSNNSNNADDDRGN
LLSPRGTISADTRTNTLIINDTAQNIDQIRKMVDLLDVSVKQVMVEARIVKASTDFTKEMGVKWGLLSQGINQNDHLLVG
GSDTTLWDLKTPDDDGKYTIQRPSNLNVDLGVTTAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTADKQP
AKVASGQEIPYQTITGTGSNATSSTEFKEALLSLDVTPSITPDGKVQMKLNIKSDSPAGYAQNGEIILNKNEINTDVLVN
NGETVVLGGIFNQETQSKQTKVPFLGDIPYVGRLFRKDMKSDAKNELLIFVTPRIVNDSVTRNH

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=670166 MST18_RS01560 WP_180133283.1 327898..330012(+) (pilQ) [Acinetobacter sp. YH12068_T]
ATGAATCATGTGTTTCGTCAGTTTTCGATGGGGGCTGTTGCAATGGCGATGATGCAAGTTGCCAATGCTCAGGTGAGTGT
AACCAATGTGGTACCAATGCAAATTCCAGGTCAAGGGACTGAAATTCGCGTGATGTTTAATGGCTTGCCGCCGCAACCAC
AAGCTTATCAACTCGATCAACCATCACGACTAGTTTTAGACTTTGATAAAGCACAGCAAAATTTAAAACAAAGTTCAATT
CCTGTTGCAACGGCTGAAGCGAGCACTGTGGATGTGAGTTCGGATGCACAACGTGCGCGCTTAACTGTGAATTTAGCCAA
TGCTGGCGCTTTTACCACGCGTGTTGAAGGTAATACCTTTATTTTAAAAATCAACTCTGCACAAGCTGCAAATTATGTAC
AGCCTGTAGCACAACGTCAGCAACAGGGCATCTCAAATATTGGTTTCCACCGTGGTTCTAATGGTGAAGGTCAAGTTGTT
GTTGATTTACTGGGTGGAAATACCCCCGTTGATGTTCAACAGCAAGGCAGTAAAGTGGTGATCCGTACTTTAGGCAATAA
AGTACCTGCACATTTGACTCGCCGTTTAAATGTCAATGATTTTGCAACACCTGTTGCAACGGTAGATGCACATAATGATG
GCGGTAATGGTGTGATTACCATTCAGTCGACGGGCAGCTATGAATATATGGCGTACCAAACAGATAATAAATTAACGGTA
AGTTTGAAACGTCCGGAAGATAAGAATCCATTACGTCCTAAAGCTGCCAATCATTATATCGGTAAGAAGATTTCATTAGA
CTTCCAAGATATTGAAGTACGTCGTGTGCTGCAACTTTTGGCTGATTTCACTGAAATCAATATGGTTGCTGCTGATACGG
TTCAAGGAAATATTACACTTCGCTTAAAAGATGTGCCTTGGGATCAAGCGCTAGATATCGTATTGAAAACCAAGAATTTG
GACAAACGTCGTAATGGTAATGTGATTTGGATTGCGCCTGTATCTGAGTTGATTAAAGCGGAAGAAGAAGAAGCAAAAGC
CTTACGTCAAAGTATGAAGTTGGCACCATTACAGACTGAATATTTAACGTTAAGCTATGCAAAAGCTGCTGAGCTAGAGA
AGCTGATTACGCAGTCTAAAACTGCGGGTAATAGCGGTTCGTCAAATAATAGTAATAATGCTGATGATGATCGGGGTAAT
TTGTTAAGTCCACGCGGAACAATTTCTGCAGATACGCGTACAAATACACTGATTATTAATGATACCGCGCAAAACATTGA
TCAGATTCGTAAGATGGTGGATTTGCTTGATGTATCAGTCAAGCAGGTCATGGTTGAAGCACGTATTGTAAAAGCATCTA
CTGACTTTACCAAAGAAATGGGTGTGAAATGGGGTCTCTTGTCCCAAGGGATTAACCAAAATGACCATTTATTGGTGGGT
GGTAGTGATACTACGCTTTGGGACCTAAAAACACCGGATGATGATGGGAAATATACTATTCAACGTCCAAGTAACTTAAA
CGTGGACTTAGGGGTGACTACTGCAGGTGCCAGTCGAATTGCGTTCGGCTTAATTAGTCTTTCTGATTTTATGTTGGATT
TAGAGCTTTCTGCTTTACAAGCAGATGGTTATGGTGAAGTCATTTCTACACCAAAAGTACTGACAGCGGATAAACAACCC
GCCAAAGTTGCATCAGGTCAAGAAATTCCGTATCAAACCATAACGGGTACAGGTTCAAATGCGACTTCTTCTACCGAGTT
TAAAGAAGCTTTATTAAGTTTGGATGTCACGCCTAGCATTACTCCAGATGGTAAAGTGCAAATGAAGCTGAATATCAAGA
GTGACTCACCAGCAGGTTATGCACAAAATGGTGAAATCATCCTGAATAAAAATGAAATTAATACCGATGTCTTAGTCAAC
AATGGTGAAACTGTTGTGCTCGGCGGTATTTTTAATCAGGAAACACAAAGTAAGCAAACTAAAGTACCGTTCTTAGGTGA
TATTCCTTATGTAGGTCGCTTATTCCGTAAAGATATGAAAAGCGATGCAAAAAATGAGTTACTGATTTTTGTTACTCCGC
GAATTGTTAATGACAGTGTTACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(538-696)

AMIN domain (AMIN)

(40-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.515

100

0.764
  pilQ Acinetobacter baumannii strain A118

74.377

100

0.763
  comQ Acinetobacter baylyi ADP1

73.596

100

0.744
  pilQ Pseudomonas aeruginosa PAK

41.536

99.858

0.415