Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MST18_RS01135 Genome accession   NZ_CP094555
Coordinates   240723..242288 (-) Length   521 a.a.
NCBI ID   WP_180133259.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 235723..247288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS01120 (MST18_01120) gpmI 236513..238060 (+) 1548 WP_180133261.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MST18_RS01125 (MST18_01125) - 238078..239253 (+) 1176 WP_180126981.1 S41 family peptidase -
  MST18_RS01130 (MST18_01130) pilR 239276..240703 (-) 1428 WP_180133260.1 sigma-54 dependent transcriptional regulator Regulator
  MST18_RS01135 (MST18_01135) pilS 240723..242288 (-) 1566 WP_180133259.1 PAS domain-containing sensor histidine kinase Regulator
  MST18_RS01140 (MST18_01140) - 242311..242946 (-) 636 WP_180024243.1 response regulator -
  MST18_RS01145 (MST18_01145) - 243159..244208 (+) 1050 WP_143221671.1 serine hydrolase -
  MST18_RS01150 (MST18_01150) thrC 244333..245472 (-) 1140 WP_078192584.1 threonine synthase -
  MST18_RS01155 (MST18_01155) - 245535..246839 (-) 1305 WP_078192857.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59953.60 Da        Isoelectric Point: 6.6796

>NTDB_id=670157 MST18_RS01135 WP_180133259.1 240723..242288(-) (pilS) [Acinetobacter sp. YH12068_T]
MTQRSIHSELNQYHLGLWYSAYRFIISACLLLVFLLTYTQFTSDYEYPRLYLYVLTIYLLFTSIQFMSLGRFKVRIPNQL
LLLFIVDVISLSLLTLAIDGPNLHLSLLFVITIFAASLLLDAQKALVITLIAVICVVYQLFLGSILEFTSLKNLTNSAIL
AFLFCVVYGSAQIAVKRFQLLENLNFSQSLELHRLQNINRYILEQIDTGYLVLDENCHVVLSNPAACHLLGMPNFYHHDQ
YPLYTTQPDLFELLKFEDLKSGEKFQFESQQSQYHIQVLVQKLVVPHQMLTLLILQDAQKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVHANDLYPQSDTEQQHMLNHMISRQAVRIDRIIQDTLNMVRNKETHPTRLNLEQFLPLFLQEDLADIQQ
NIRLNVQAKTFIDFDEAQFRQILINLIRNAIRHNNPDMSYIEVVARTDQKKVQIDVRDFGHGVALQNRAQLFQPFFSTEI
TGTGLGLYLAHSFCEANQAQLSYVEQKQGACFRIECLQAVI

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=670157 MST18_RS01135 WP_180133259.1 240723..242288(-) (pilS) [Acinetobacter sp. YH12068_T]
ATGACACAGCGTTCAATTCATAGTGAATTGAACCAGTATCATTTGGGTCTTTGGTACAGTGCTTATCGCTTTATCATCAG
TGCCTGTCTGTTACTGGTCTTTTTACTGACCTACACTCAATTCACTTCAGATTATGAATACCCACGTTTATACCTATATG
TATTGACGATTTATTTGCTGTTTACCAGCATTCAATTCATGTCACTTGGACGTTTCAAAGTCCGTATTCCAAACCAGTTA
CTACTGTTATTCATTGTAGATGTCATTTCGCTGAGCTTACTGACCTTAGCCATCGATGGACCCAATTTACATTTGAGTTT
GCTGTTTGTGATTACGATTTTTGCAGCGTCCCTATTATTAGATGCCCAAAAAGCTTTGGTCATTACCCTCATCGCTGTGA
TTTGCGTGGTGTATCAACTGTTTTTAGGTTCAATTCTTGAATTTACCTCACTCAAAAATTTAACCAACAGTGCGATTTTG
GCTTTTTTATTTTGTGTAGTGTATGGCAGTGCGCAAATTGCCGTGAAACGTTTCCAGTTATTGGAAAATCTGAATTTTTC
GCAATCCTTAGAGCTCCATCGGCTACAAAACATTAACCGCTATATCTTGGAGCAGATTGATACGGGCTATTTGGTGTTGG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCTTGCCATTTACTCGGCATGCCAAATTTTTATCATCATGATCAA
TATCCACTGTATACCACGCAGCCCGATTTATTTGAATTACTCAAATTTGAAGATTTAAAAAGCGGTGAAAAATTCCAATT
TGAATCCCAACAAAGCCAATACCACATTCAGGTACTGGTACAAAAACTCGTTGTGCCGCATCAAATGCTGACCTTGCTGA
TTTTACAAGATGCACAAAAACTCAATCAGCAAGTGCAACAACTAAAATTAGCCGCTTTAGGTCAACTCTCCGCCAGTATT
GCCCACGAAATTCGCAATCCTTTAGCCGCAATTGTGCATGCCAATGATTTATATCCGCAAAGTGATACCGAACAACAGCA
CATGTTGAATCATATGATTTCACGTCAAGCAGTGCGGATTGACCGAATTATTCAAGACACCCTAAATATGGTGCGCAATA
AGGAAACCCATCCGACTCGTCTAAATCTAGAACAATTTTTACCGTTGTTCCTTCAAGAAGATCTGGCAGACATTCAACAG
AACATTCGACTCAATGTACAAGCCAAAACCTTTATCGATTTTGATGAGGCACAGTTCAGACAAATTTTAATCAACCTGAT
TCGTAATGCGATTCGCCATAACAATCCGGACATGTCGTATATCGAAGTGGTGGCGCGTACGGATCAGAAAAAAGTCCAGA
TCGATGTCCGAGATTTCGGTCATGGGGTTGCTTTACAAAACCGCGCACAGTTATTTCAACCATTTTTTAGTACCGAAATT
ACCGGAACTGGTTTAGGATTATATCTTGCTCATAGCTTCTGTGAAGCGAATCAAGCACAGCTTTCCTATGTAGAACAAAA
ACAGGGAGCTTGCTTTAGGATTGAGTGCTTACAAGCTGTTATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.634

96.929

0.549