Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG826_RS20515 Genome accession   NZ_CP109041
Coordinates   4579100..4580509 (+) Length   469 a.a.
NCBI ID   WP_266761296.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00645     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4574100..4585509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG826_RS20500 (OG826_20510) - 4574972..4575904 (-) 933 WP_266761299.1 Ppx/GppA phosphatase family protein -
  OG826_RS20505 (OG826_20515) - 4576034..4576873 (+) 840 WP_266761298.1 hypothetical protein -
  OG826_RS20510 (OG826_20520) - 4576928..4578736 (-) 1809 WP_266761297.1 BACON domain-containing protein -
  OG826_RS20515 (OG826_20525) radA/sms 4579100..4580509 (+) 1410 WP_266761296.1 DNA repair protein RadA Machinery gene
  OG826_RS20520 (OG826_20530) disA 4580578..4581702 (+) 1125 WP_266761294.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG826_RS20525 (OG826_20535) - 4581852..4582685 (-) 834 WP_266761292.1 hypothetical protein -
  OG826_RS20530 (OG826_20540) - 4582877..4583794 (+) 918 WP_266761290.1 A/G-specific adenine glycosylase -
  OG826_RS20535 (OG826_20545) - 4584046..4584585 (+) 540 WP_266761288.1 SigE family RNA polymerase sigma factor -
  OG826_RS20540 (OG826_20550) - 4584573..4585223 (+) 651 WP_266761286.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49687.86 Da        Isoelectric Point: 8.2557

>NTDB_id=670156 OG826_RS20515 WP_266761296.1 4579100..4580509(+) (radA/sms) [Streptomyces sp. NBC_00645]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRTEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVLEVADIGAALSVLPRSRRREAPREEEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=670156 OG826_RS20515 WP_266761296.1 4579100..4580509(+) (radA/sms) [Streptomyces sp. NBC_00645]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCACGCCCGCTGTCCGGACGACGGCACCGGGGC
GGGTCACCACGTCAGCGGTGCCCATCGGACAGGTCGACGGCCGTCAGGCCACCGCCCGCAGCACCGGCGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGTCTCGTGCCCGGAGCGGTGGTCCTCGTCGCGGGTGAGCCGGGCGTCGGCAAGTCCACGCT
CCTCCTGGACGTGGCGGCCAAGTCCGCGAGCGACGAGCACCGCACGCTGTACGTGACGGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTCCGCGCGGACCGCATCAAGGCGATCGACGACCACCTCTATCTCGCCGCGGAGACCGATCTGGCGGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCCTGGACTCCGTCCAGACGATCGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGCGCGCTCATCCGTGCCTCCAAGGAGCGCGGCATGTCCACCCTGC
TTGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCCCGGCTGCTCGAGCACCTCGTGGACGTCGTCCTGTCGTTC
GAGGGCGACCGGCACGCGCGTCTGAGGCTCGTCCGAGGCGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCACCGACCCGTCGGGGCTCTTCCTCACGCGCCGCACCGAGCCCGTCCCCG
GCACCTGTCTGACCGTCACCCTCGAAGGCCGCCGCCCCCTGGTCGCCGAGGTGCAGGCGCTCACGGTGGACTCGCAGATC
CCCTCCCCGCGCCGTACGACATCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTTCTGGAGCAGCGCGGGCG
GATCAGCGCACTCGGAAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CCATCGCGCTCGCCCTGGCGTCCGCGGCGAGCGATACCCCGCTGCCCAAGAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTGGCCGAAGCACACCGTCTGGGCTTCACCCACGCGCTCGT
GCCGACCGATCCCGGCAAGGTCCCGGCGGGCATGAAAGTCCTGGAAGTGGCCGACATCGGAGCGGCGCTGAGCGTGCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGAAGAGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus pneumoniae D39

44.601

90.832

0.405
  radA Streptococcus pneumoniae R6

44.601

90.832

0.405
  radA Streptococcus pneumoniae Rx1

44.601

90.832

0.405
  radA Streptococcus mitis SK321

44.601

90.832

0.405
  radA Streptococcus mitis NCTC 12261

44.601

90.832

0.405
  radA Streptococcus pneumoniae TIGR4

44.601

90.832

0.405