Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MST17_RS02085 Genome accession   NZ_CP094545
Coordinates   434377..435009 (-) Length   210 a.a.
NCBI ID   WP_180026062.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429377..440009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS02050 (MST17_02050) mlaE 429658..430437 (+) 780 WP_078189301.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  MST17_RS02055 (MST17_02055) - 430437..431117 (+) 681 WP_078189300.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MST17_RS02060 (MST17_02060) - 431135..431770 (+) 636 WP_078189299.1 phospholipid-binding protein MlaC -
  MST17_RS02065 (MST17_02065) - 431810..432070 (+) 261 WP_218945760.1 lipid asymmetry maintenance protein MlaB -
  MST17_RS02070 (MST17_02070) - 432149..433162 (-) 1014 WP_078189297.1 CorA family divalent cation transporter -
  MST17_RS02075 (MST17_02075) - 433318..433923 (+) 606 WP_180026064.1 TIGR00730 family Rossman fold protein -
  MST17_RS02080 (MST17_02080) - 433923..434330 (+) 408 WP_180026063.1 NUDIX domain-containing protein -
  MST17_RS02085 (MST17_02085) comF 434377..435009 (-) 633 WP_180026062.1 ComF family protein Machinery gene
  MST17_RS02090 (MST17_02090) recG 435156..437201 (-) 2046 WP_180003443.1 ATP-dependent DNA helicase RecG -
  MST17_RS02095 (MST17_02095) - 437261..438040 (+) 780 WP_180021597.1 NAD-dependent epimerase/dehydratase family protein -
  MST17_RS02100 (MST17_02100) - 438239..438787 (+) 549 WP_373685436.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24381.48 Da        Isoelectric Point: 9.2435

>NTDB_id=670130 MST17_RS02085 WP_180026062.1 434377..435009(-) (comF) [Acinetobacter sp. YH16056_T]
MLQSIQHFIQKGIQSVSPCLLCGIDRQQHHSLCTDCWAQLPWFKQAVDRHEHSISCAFYYDFPIDRIIQSYKYEQQLHYQ
NLLAQSLLSLRLARVQAIVPMPISVERLKDRGYNQMLLVAQMMAKKLRIPVWQPVIRQAQHAQKGLSRLERLENIEQQFI
INPTEKRRFRKVLIIDDVVTTGSSIHALSTLLHQLHCTQVYVACIAAAQP

Nucleotide


Download         Length: 633 bp        

>NTDB_id=670130 MST17_RS02085 WP_180026062.1 434377..435009(-) (comF) [Acinetobacter sp. YH16056_T]
ATGCTCCAATCTATCCAACACTTCATCCAAAAAGGAATACAGAGCGTTTCCCCTTGCCTGCTCTGCGGTATCGATCGACA
ACAACATCATTCGCTTTGTACCGACTGCTGGGCACAACTGCCTTGGTTTAAACAAGCGGTTGATCGCCATGAACACAGCA
TCTCTTGTGCCTTTTACTATGATTTCCCTATAGATCGCATCATTCAAAGCTATAAGTATGAGCAACAATTGCACTATCAA
AATTTACTGGCACAGAGCCTTTTAAGCTTGCGCTTAGCTAGGGTTCAAGCCATCGTCCCCATGCCTATTTCAGTAGAACG
CCTTAAAGACCGTGGGTATAACCAAATGCTGCTCGTTGCACAGATGATGGCAAAGAAATTGCGCATCCCTGTTTGGCAAC
CGGTGATTCGTCAAGCACAGCACGCTCAAAAAGGTTTAAGTCGGCTAGAACGCCTAGAAAATATCGAACAACAATTTATT
ATCAACCCAACCGAAAAACGCCGTTTCCGTAAAGTCCTCATCATTGATGATGTGGTGACCACGGGGAGTTCAATCCATGC
ATTAAGTACGCTGTTACATCAGCTACATTGCACGCAGGTATATGTCGCATGCATTGCTGCGGCACAGCCTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(120-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.714

93.333

0.567
  comF Acinetobacter baumannii D1279779

60.204

93.333

0.562