Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   TAO_RS08125 Genome accession   NZ_AP014836
Coordinates   1718059..1719120 (+) Length   353 a.a.
NCBI ID   WP_096527433.1    Uniprot ID   A0A1Q2SP92
Organism   Candidatus Nitrosoglobus terrae strain TAO100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1713059..1724120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TAO_RS08100 (TAO_1567) - 1713841..1714089 (-) 249 WP_096527428.1 YfhL family 4Fe-4S dicluster ferredoxin -
  TAO_RS08105 (TAO_1568) coaD 1714116..1714604 (-) 489 WP_096527429.1 pantetheine-phosphate adenylyltransferase -
  TAO_RS08110 (TAO_1569) rsmD 1714628..1715209 (-) 582 WP_096527430.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  TAO_RS08115 (TAO_1570) - 1715232..1716536 (-) 1305 WP_096527431.1 pitrilysin family protein -
  TAO_RS08120 (TAO_1571) - 1716526..1717908 (-) 1383 WP_096527432.1 pitrilysin family protein -
  TAO_RS08125 (TAO_1572) pilA 1718059..1719120 (+) 1062 WP_096527433.1 signal recognition particle-docking protein FtsY Machinery gene
  TAO_RS08130 (TAO_1573) ilvD 1719149..1721008 (-) 1860 WP_096527434.1 dihydroxy-acid dehydratase -
  TAO_RS08135 (TAO_1574) rep 1721070..1723070 (-) 2001 WP_096527435.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38744.76 Da        Isoelectric Point: 8.1000

>NTDB_id=67012 TAO_RS08125 WP_096527433.1 1718059..1719120(+) (pilA) [Candidatus Nitrosoglobus terrae strain TAO100]
MVNFFKRWQKNPTQSPDITSPTPIDTKVVPENSKEEITTPQKQFFSRLYDRLSRTRNHLSSGIYSLILGKKTIDDQLLEE
IETQLLIADVGVETAQSIIQDLTARVSRKELKDPERLMGALQENMQALLKPCHQPLVLPENLKPFTILMVGINGAGKTTT
IGKLAKRFQAQNRSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQHKGADSASVIFDAMQSAQARGIDVLIADTAGRLHT
QANLMEELKKIKRVMTKADPTAPHEILLTVDAGIGQNALAQTQQFHQAIGLTGIALTKLDGTAKGGIIFAIARKMALPIR
FIGVGEGVDDLRPFDAEEFVEALLTLAPPKESV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=67012 TAO_RS08125 WP_096527433.1 1718059..1719120(+) (pilA) [Candidatus Nitrosoglobus terrae strain TAO100]
ATGGTAAATTTCTTTAAACGCTGGCAAAAAAACCCAACACAAAGCCCAGATATAACAAGCCCTACCCCAATAGACACAAA
AGTCGTACCAGAAAATTCTAAAGAAGAAATAACAACGCCTCAGAAACAGTTCTTTAGCAGGCTATACGATCGCCTTAGTC
GCACTCGTAATCATTTATCAAGCGGTATCTATAGCCTCATACTGGGTAAAAAGACCATTGACGATCAGTTGTTGGAAGAA
ATCGAAACACAGCTGCTTATTGCTGATGTGGGAGTAGAAACCGCTCAGTCTATTATTCAGGATCTTACCGCCAGAGTCTC
ACGTAAAGAGCTTAAAGACCCCGAACGCTTAATGGGGGCGCTGCAGGAAAACATGCAAGCACTACTAAAACCATGCCACC
AACCCTTAGTGCTCCCAGAAAACCTTAAACCTTTTACTATTTTAATGGTGGGTATTAACGGTGCGGGCAAAACCACTACT
ATTGGTAAACTCGCAAAAAGATTTCAAGCCCAAAATCGCTCAGTGATGCTAGCCGCAGGAGACACCTTTAGGGCGGCGGC
TGTAGAGCAGCTCCAAGTCTGGGGTGAACGCAATCAGATTCCCGTCATTGCTCAACATAAAGGGGCTGATTCGGCTTCCG
TTATTTTTGATGCGATGCAATCTGCTCAAGCTCGGGGCATTGATGTATTGATTGCAGATACAGCGGGTCGCCTTCATACG
CAAGCCAATTTAATGGAGGAGCTTAAAAAAATTAAACGCGTTATGACCAAAGCCGATCCCACAGCGCCTCATGAAATATT
ATTAACTGTTGATGCTGGAATTGGGCAAAATGCTCTGGCTCAAACACAGCAATTCCACCAAGCTATAGGTCTTACGGGTA
TCGCTTTGACTAAATTAGACGGCACTGCTAAGGGAGGAATTATCTTTGCAATTGCCAGAAAGATGGCGCTTCCTATCCGA
TTCATCGGTGTAGGAGAGGGGGTTGATGACCTACGTCCATTTGATGCCGAAGAGTTCGTAGAGGCTTTATTAACCCTAGC
TCCTCCAAAAGAGAGCGTTTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(145-344)

SRP54-type protein, helical bundle domain (SRP54_N)

(61-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2SP92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

57.143

85.269

0.487

Multiple sequence alignment