Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MST17_RS01200 Genome accession   NZ_CP094545
Coordinates   257015..258580 (-) Length   521 a.a.
NCBI ID   WP_180026526.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 252015..263580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01185 (MST17_01185) gpmI 252805..254352 (+) 1548 WP_180026523.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MST17_RS01190 (MST17_01190) - 254370..255545 (+) 1176 WP_180026524.1 S41 family peptidase -
  MST17_RS01195 (MST17_01195) pilR 255568..256944 (-) 1377 WP_218949186.1 sigma-54 dependent transcriptional regulator Regulator
  MST17_RS01200 (MST17_01200) pilS 257015..258580 (-) 1566 WP_180026526.1 PAS domain-containing sensor histidine kinase Regulator
  MST17_RS01205 (MST17_01205) - 258603..259238 (-) 636 WP_078189449.1 response regulator -
  MST17_RS01210 (MST17_01210) - 259451..260500 (+) 1050 WP_180004717.1 serine hydrolase -
  MST17_RS01215 (MST17_01215) thrC 260623..261762 (-) 1140 WP_078192584.1 threonine synthase -
  MST17_RS01220 (MST17_01220) - 261825..263129 (-) 1305 WP_180008061.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59845.46 Da        Isoelectric Point: 6.6796

>NTDB_id=670118 MST17_RS01200 WP_180026526.1 257015..258580(-) (pilS) [Acinetobacter sp. YH16056_T]
MTQRSIHSELNQYHLGLWYSAYRFIISACLLLVFLLTYTQFSSDYEYPRLYLYVLTIYLLFTSIQFMSLGRFKVRIPNQL
LLLFIVDVISLSLLTLAIDGPNLHLSLLFVITIFAASLLLDAQKALVITLIAVICVVYQLFLGSILEFTSLKNLTNSAIL
AFLFCVVYGSAQIAVKRFQLLENLNFSQSLELHRLQNINRYILEQIDTGYLVLDENCHVVLSNPAACHLLGMPNSYHHDQ
YPLYTTQPDLFELLKFEDLKSGEKFQFESQQSQYHIQVLVQKLVVPHQMLTLLILQDAQKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVHANDLYPQSDTEQQHMLNHMISRQAVRIDRIIQDTLNMVRNKETHPTRLNLEQFLPLFLQEDLADIQQ
NIRLNVQAKTLIDFDEAQFRQILINLIRNAIRHNNPDMSYIEVVARTDQKKVQIDVRDFGHGVALQNRAQLFQPFFSTEI
TGTGLGLYLAHSFCEANQAQLSYVEQKQGACFRIECLQAVI

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=670118 MST17_RS01200 WP_180026526.1 257015..258580(-) (pilS) [Acinetobacter sp. YH16056_T]
ATGACACAGCGTTCAATCCATAGTGAATTGAACCAGTATCATTTGGGCCTTTGGTACAGTGCTTATCGCTTTATCATCAG
TGCCTGTCTGTTACTGGTCTTTTTACTGACCTACACTCAATTCAGTTCAGATTATGAATACCCACGTTTATACCTATATG
TATTGACGATTTATTTGCTGTTTACCAGCATTCAATTCATGTCGCTTGGACGCTTCAAAGTCCGTATTCCAAACCAGCTA
CTGCTGTTATTCATCGTAGATGTGATTTCGCTGAGCTTACTGACCTTAGCCATCGATGGACCCAATTTACATTTGAGTTT
GCTGTTTGTGATTACGATTTTTGCAGCATCCCTGTTATTAGATGCCCAAAAAGCCTTGGTCATCACCCTCATCGCTGTGA
TCTGTGTGGTATATCAACTGTTTTTAGGTTCAATTCTTGAATTTACCTCACTTAAAAATTTAACCAACAGTGCGATTTTG
GCTTTTTTATTTTGTGTAGTGTATGGCAGTGCGCAAATTGCCGTGAAACGTTTTCAGTTATTGGAAAATCTGAATTTTTC
GCAATCTTTAGAGCTACATCGACTACAAAACATTAACCGCTATATTTTAGAACAGATTGATACGGGCTATTTGGTTTTGG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCTTGCCATTTACTCGGCATGCCAAATTCTTATCATCATGATCAA
TATCCACTGTATACCACGCAGCCCGACTTATTTGAATTACTCAAGTTTGAAGATTTAAAAAGCGGGGAAAAATTTCAATT
TGAATCGCAACAAAGCCAATACCACATTCAGGTACTCGTACAAAAACTCGTTGTGCCGCATCAAATGCTGACCTTGCTGA
TTTTACAAGATGCACAAAAACTCAATCAGCAAGTGCAACAACTAAAATTAGCCGCTTTAGGGCAACTCTCCGCCAGTATT
GCTCACGAAATTCGTAATCCTTTAGCGGCGATTGTGCATGCCAATGATTTATATCCGCAAAGTGATACCGAACAACAGCA
CATGTTGAATCATATGATTTCACGTCAAGCGGTGCGGATTGACCGAATTATTCAAGACACCCTAAATATGGTGCGCAATA
AGGAAACCCATCCGACTCGTCTGAATCTAGAACAATTTTTACCGTTGTTCCTACAAGAAGATCTGGCAGACATTCAACAG
AACATTCGACTCAATGTACAAGCCAAAACCTTGATCGATTTTGATGAGGCACAGTTCAGACAAATTTTAATCAACCTAAT
TCGTAATGCGATTCGCCATAACAATCCGGACATGTCGTATATCGAAGTGGTGGCGCGTACAGATCAAAAAAAAGTCCAGA
TCGATGTCCGAGATTTCGGTCATGGGGTTGCTTTACAAAATCGCGCACAGTTATTTCAACCATTTTTTAGTACCGAAATT
ACTGGAACTGGTTTAGGATTATATCTTGCTCATAGCTTCTGTGAAGCGAATCAAGCACAGCTTTCCTATGTAGAACAAAA
ACAGGGAGCTTGCTTTAGGATTGAGTGCTTACAAGCTGTTATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.832

96.929

0.551