Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MST16_RS14970 Genome accession   NZ_CP094541
Coordinates   3031923..3032393 (-) Length   156 a.a.
NCBI ID   WP_180004773.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3026923..3037393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS14940 (MST16_14910) - 3028574..3029083 (+) 510 WP_180092274.1 hypothetical protein -
  MST16_RS14945 (MST16_14915) rplS 3029193..3029564 (-) 372 WP_078189351.1 50S ribosomal protein L19 -
  MST16_RS14950 (MST16_14920) trmD 3029704..3030444 (-) 741 WP_180004770.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MST16_RS14955 (MST16_14925) rimM 3030487..3031035 (-) 549 WP_180004771.1 ribosome maturation factor RimM -
  MST16_RS14960 (MST16_14930) rpsP 3031054..3031311 (-) 258 WP_005013161.1 30S ribosomal protein S16 -
  MST16_RS14965 (MST16_14935) - 3031455..3031922 (-) 468 WP_180004772.1 type IV pilin protein -
  MST16_RS14970 (MST16_14940) comE 3031923..3032393 (-) 471 WP_180004773.1 type IV pilin protein Machinery gene
  MST16_RS14975 (MST16_14945) - 3032407..3036066 (-) 3660 WP_180092271.1 pilus assembly protein PilY -
  MST16_RS14980 (MST16_14950) - 3036078..3036797 (-) 720 WP_180004775.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17073.36 Da        Isoelectric Point: 9.0291

>NTDB_id=670097 MST16_RS14970 WP_180004773.1 3031923..3032393(-) (comE) [Acinetobacter sp. YH16040_T]
MIKDKFSGFTLIELMVVVVIVAIFAAIAIPSYQEYVRRAHASQAQQEMMHLSSLLERHKARNFSYRNFTPSAVVIPEGAT
GSAIKYNIEVVSGDNSNPLLNASTATGRSWVIRGLSTDTQNYSFLLTSTGIRCKNKAAENVSFTSCGNTNSGSETW

Nucleotide


Download         Length: 471 bp        

>NTDB_id=670097 MST16_RS14970 WP_180004773.1 3031923..3032393(-) (comE) [Acinetobacter sp. YH16040_T]
ATGATTAAAGACAAATTCTCTGGGTTTACGCTTATAGAATTGATGGTGGTTGTGGTGATTGTTGCAATATTTGCAGCAAT
CGCTATTCCTTCTTATCAAGAATATGTACGACGTGCACACGCAAGTCAGGCCCAACAAGAGATGATGCATCTTTCTAGCT
TGTTAGAAAGACATAAGGCTAGAAATTTTTCTTATAGGAATTTTACTCCTTCTGCTGTGGTTATTCCAGAAGGTGCGACT
GGAAGTGCCATTAAATATAATATAGAAGTTGTTAGCGGAGATAATAGTAACCCTCTGCTAAATGCATCTACTGCAACTGG
TCGTAGTTGGGTTATTAGGGGATTGAGTACGGATACTCAAAACTATTCATTTTTACTAACAAGTACAGGCATTCGTTGTA
AGAACAAAGCAGCAGAAAACGTTAGTTTTACAAGCTGTGGAAATACTAACTCTGGTAGTGAGACATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

48.214

100

0.519
  pilY2 Acinetobacter baumannii D1279779

45.161

99.359

0.449